RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 MAPK14Q16539 360 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 NTRK2Q16620 822 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 MEP1AQ16819 746 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 OR2T5Q6IEZ7 315 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 ZNF836Q6ZNA1 936 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 ZNF550Q7Z398 422 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 ZAR1Q86SH2 424 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 CARM1Q86X55 608 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 LILRA2Q8N149 483 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 SVOPLQ8N434 492 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 CLEC1AQ8NC01 280 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 OR2T29Q8NH02 315 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 OR4C3Q8NH37 302 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 LRTOMTQ8WZ04 291 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 EFHD2Q96C19 240 aaPredicted RBP14.05□□□□□ -0.16
SS18-215ENST00000580642 SGCZQ96LD1 299 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 RASL10BQ96S79 203 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 PIP5K1AQ99755 562 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 PKP2Q99959 881 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 ANKRD19PQ9H560 264 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 NKX1-2Q9UD57 310 aaPredicted RBP14.05□□□□□ -0.16
SS18-215ENST00000580642 ACAD8Q9UKU7 415 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 CDC14CA4D256 554 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 WWP2O00308 870 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 PEX1O43933 1283 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 EIF4E2O60573 245 aaKnown RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 UGT2B11O75310 529 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 ITGA10O75578 1167 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 OR2J2O76002 312 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 OXSR1O95747 527 aaPredicted RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 THRBP10828 461 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 CYP4B1P13584 511 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 RFX3P48380 749 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 ARHGDIAP52565 204 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 HMGA2P52926 109 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 ZNF791Q3KP31 576 aaPredicted RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 PDZK1Q5T2W1 519 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 MRPL2Q5T653 305 aaKnown RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 FNDC7Q5VTL7 733 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 LYPD8Q6UX82 237 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 RANBP3LQ86VV4 465 aaPredicted RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 FAM71CQ8NEG0 241 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 KCNE4Q8WWG9 221 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 HGDQ93099 445 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 SPACA9Q96E40 222 aaPredicted RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 RSPO3Q9BXY4 272 aaPredicted RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 AMBRA1Q9C0C7 1298 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 LHPPQ9H008 270 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 QRSL1Q9H0R6 528 aaKnown RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 TESQ9UGI8 421 aaKnown RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 CNOT11Q9UKZ1 510 aaKnown RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 SSUH2Q9Y2M2 353 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 CHST2Q9Y4C5 530 aa14.04□□□□□ -0.16
SS18-215ENST00000580642 MRPS18BQ9Y676 258 aaKnown RBP14.04□□□□□ -0.16
SS18-215ENST00000580642 FAAHO00519 579 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 GNGT2O14610 69 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 AP3D1O14617 1153 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 FADS1O60427 444 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 EPPINO95925 133 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 ITGAMP11215 1152 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 UQCRBP14927 111 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 ID4P47928 161 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 SLC6A8P48029 635 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 SSR4P51571 173 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 RGS8P57771 180 aaPredicted RBP14.03□□□□□ -0.16
SS18-215ENST00000580642 Q0VFX4 171 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 GRAMD1BQ3KR37 738 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 OLIG3Q7RTU3 272 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 PACRGLQ8N7B6 248 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 POGLUT1Q8NBL1 392 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 PHF10Q8WUB8 498 aaKnown RBP14.03□□□□□ -0.16
SS18-215ENST00000580642 DHRS1Q96LJ7 313 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 PRRC1Q96M27 445 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 EPYCQ99645 322 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 TBL1XR1Q9BZK7 514 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 VCXQ9H320 206 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 REEP1Q9H902 201 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 SDHAF3Q9NRP4 125 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 ABI3Q9P2A4 366 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 POLHQ9Y253 713 aa14.03□□□□□ -0.16
SS18-215ENST00000580642 ANKRD33BA6NCL7 494 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 PRAMEF25A6NGN4 478 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 H0YJX3 145 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 ICOSLGO75144 302 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 OR5F1O95221 314 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 CSTAP01040 98 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 DNAJA1P31689 397 aaKnown RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 EVI2BP34910 448 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 OR1E2P47887 323 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 SUMO3P55854 103 aaPredicted RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 TRIP10Q15642 601 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 COLEC12Q5KU26 742 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 ACER2Q5QJU3 275 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 OGFRL1Q5TC84 451 aaPredicted RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 HMBOX1Q6NT76 420 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 TSEN54Q7Z6J9 526 aaKnown RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 ZNF605Q86T29 641 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 HIPK1Q86Z02 1210 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 ZDHHC13Q8IUH4 622 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 CLIP4Q8N3C7 705 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms