RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ARGFXA6NJG6 315 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 ALG1L2C9J202 215 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 IL7RP16871 459 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 ITGA3P26006 1051 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 SOX3P41225 446 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 FBXW4P57775 412 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 KCNC4Q03721 635 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 GLIPR1L2Q4G1C9 344 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 FCRLBQ6BAA4 426 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 PIWIL3Q7Z3Z3 882 aaKnown RBP14.82□□□□□ -0.04
SS18-211ENST00000578954 HMGN2P46Q86SG4 172 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 APLFQ8IW19 511 aaPredicted RBP14.82□□□□□ -0.04
SS18-211ENST00000578954 GPALPP1Q8IXQ4 340 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 GALNT16Q8N428 558 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 SIRT6Q8N6T7 355 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 ZNF527Q8NB42 609 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 POGLUT1Q8NBL1 392 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 FAM71CQ8NEG0 241 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 OR10Q1Q8NGQ4 319 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 PROX1Q92786 737 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 NTNG2Q96CW9 530 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 TPD52L3Q96J77 140 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 SECISBP2Q96T21 854 aaKnown RBP14.82□□□□□ -0.04
SS18-211ENST00000578954 SEPHS2Q99611 448 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 ZBTB20Q9HC78 741 aaPredicted RBP14.82□□□□□ -0.04
SS18-211ENST00000578954 SH2D2AQ9NP31 389 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 WDR70Q9NW82 654 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 AURKCQ9UQB9 309 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 AP4S1Q9Y587 144 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 CPAMD8Q8IZJ3 1885 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 FREM2Q5SZK8 3169 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 SCDO00767 359 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 DNAJB5O75953 348 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 OR6B1O95007 311 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 ENDOUP21128 410 aaKnown RBP14.81□□□□□ -0.04
SS18-211ENST00000578954 EVI2BP34910 448 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 TBCELQ5QJ74 424 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 MRPL2Q5T653 305 aaKnown RBP14.81□□□□□ -0.04
SS18-211ENST00000578954 B3GNTL1Q67FW5 361 aaPredicted RBP14.81□□□□□ -0.04
SS18-211ENST00000578954 DESI1Q6ICB0 168 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 APOOLQ6UXV4 268 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 FKBP9P1Q75LS8 142 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 TSEN54Q7Z6J9 526 aaKnown RBP14.81□□□□□ -0.04
SS18-211ENST00000578954 CLIP4Q8N3C7 705 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 ASB15Q8WXK1 588 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 TMCO6Q96DC7 493 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 NODALQ96S42 347 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 CHID1Q9BWS9 393 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 ING2Q9H160 280 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 ARMC7Q9H6L4 198 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 DCLRE1BQ9H816 532 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 TEKT2Q9UIF3 430 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 SLC35A3Q9Y2D2 325 aa14.81□□□□□ -0.04
SS18-211ENST00000578954 CLDN24A6NM45 220 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 HNRNPRO43390 633 aaKnown RBP14.8□□□□□ -0.04
SS18-211ENST00000578954 CEACAM4O75871 244 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 FCGR1AP12314 374 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 VLDLRP98155 873 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 CARM1Q86X55 608 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 OR10G3Q8NGC4 313 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 OR4D11Q8NGI4 311 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 GRHL3Q8TE85 626 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 PAQR8Q8TEZ7 354 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 SGCZQ96LD1 299 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 WFDC6Q9BQY6 131 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 YY1AP1Q9H869 796 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 RNPEPL1Q9HAU8 725 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 EXOSC3Q9NQT5 275 aaKnown RBP14.8□□□□□ -0.04
SS18-211ENST00000578954 KLHL28Q9NXS3 571 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 DNAJB12Q9NXW2 375 aaKnown RBP14.8□□□□□ -0.04
SS18-211ENST00000578954 STX18Q9P2W9 335 aaKnown RBP14.8□□□□□ -0.04
SS18-211ENST00000578954 SLC9A8Q9Y2E8 581 aa14.8□□□□□ -0.04
SS18-211ENST00000578954 CHCHD2Q9Y6H1 151 aaPredicted RBP14.8□□□□□ -0.04
SS18-211ENST00000578954 TP53I11O14683 189 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 RRP8O43159 456 aaKnown RBP14.79□□□□□ -0.04
SS18-211ENST00000578954 URB1O60287 2271 aaKnown RBP14.79□□□□□ -0.04
SS18-211ENST00000578954 DPM1O60762 260 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 IFNW1P05000 195 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 FABP3P05413 133 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 HPGDP15428 266 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 TNFRSF1BP20333 461 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 PTGDSP41222 190 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 HLCSP50747 726 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 GAS1P54826 345 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 RPP38P78345 283 aaKnown RBP14.79□□□□□ -0.04
SS18-211ENST00000578954 TLE3Q04726 772 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 RCN1Q15293 331 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 CD226Q15762 336 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 ABHD17BQ5VST6 288 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 ERMP1Q7Z2K6 904 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 LACC1Q8IV20 430 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 ZDHHC21Q8IVQ6 265 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 MISPQ8IVT2 679 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 BEST3Q8N1M1 668 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 TMEM156Q8N614 296 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 PHF10Q8WUB8 498 aaKnown RBP14.79□□□□□ -0.04
SS18-211ENST00000578954 RTN4RQ9BZR6 473 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 AMBRA1Q9C0C7 1298 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 RNF32Q9H0A6 362 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 RLIMQ9NVW2 624 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms