RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ENAMQ9NRM1 1142 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 NTMQ9P121 344 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 KIF17Q9P2E2 1029 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 C19orf53Q9UNZ5 99 aaPredicted RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 HS3ST3B1Q9Y662 390 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 MAU2Q9Y6X3 613 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 A0A1B0GX78 115 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 MAGEA13PA6NCF6 341 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 FAM227AF5H4B4 570 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 PDLIM1O00151 329 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 UPK1AO00322 258 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 SOCS2O14508 198 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 EI24O14681 340 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 DSCR3O14972 297 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 FOXS1O43638 330 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 PLOD3O60568 738 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 AK1P00568 194 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ALBP02768 609 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 IFNA16P05015 189 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ETS2P15036 469 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 FBLP22087 321 aaKnown RBP9.39□□□□□ -0.91
SS18-210ENST00000578700 PTGER4P35408 488 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 XCR1P46094 333 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 OR1D4P47884 311 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ALDH3A2P51648 485 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 SMIM11AP58511 58 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 MRPS35P82673 323 aaKnown RBP9.39□□□□□ -0.91
SS18-210ENST00000578700 Q0VFX4 171 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 DAG1Q14118 895 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 DSG2Q14126 1118 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 PDK3Q15120 406 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 NKG7Q16617 165 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 RFX4Q33E94 735 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ZNF628Q5EBL2 1059 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 MFSD4BQ5TF39 518 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 KRT80Q6KB66 452 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 MFSD12Q6NUT3 480 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 CDC73Q6P1J9 531 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 VTCN1Q7Z7D3 282 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ST13P4Q8IZP2 240 aaPredicted RBP9.39□□□□□ -0.91
SS18-210ENST00000578700 VWA5B2Q8N398 1253 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ARHGEF39Q8N4T4 335 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 DHRSXQ8N5I4 330 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 COX18Q8N8Q8 333 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 CDRT4Q8N9R6 151 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ZNF555Q8NEP9 628 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 OR7G2Q8NG99 324 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 OR5D16Q8NGK9 328 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 FAM110BQ8TC76 370 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 RIT1Q92963 219 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 FKBP10Q96AY3 582 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 TAMM41Q96BW9 452 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 NRBF2Q96F24 287 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 CCDC120Q96HB5 630 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 CNBD2Q96M20 576 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 COL21A1Q96P44 957 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 TRNT1Q96Q11 434 aaKnown RBP9.39□□□□□ -0.91
SS18-210ENST00000578700 OR1F2PQ96R84 312 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 OR7D2Q96RA2 312 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 SLC29A1Q99808 456 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 TREX2Q9BQ50 279 aaPredicted RBP9.39□□□□□ -0.91
SS18-210ENST00000578700 SLX1AQ9BQ83 275 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 MESP1Q9BRJ9 268 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ALOXE3Q9BYJ1 711 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 RBCK1Q9BYM8 510 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.39□□□□□ -0.91
SS18-210ENST00000578700 ARMC7Q9H6L4 198 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ZNF160Q9HCG1 818 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ZNF304Q9HCX3 659 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 BCL2L10Q9HD36 194 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ADAP2Q9NPF8 381 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 BATF3Q9NR55 127 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 GIN1Q9NXP7 522 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 KLHL28Q9NXS3 571 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ZNF639Q9UID6 485 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 SCOCQ9UIL1 159 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 ZNF232Q9UNY5 417 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 SLC9A8Q9Y2E8 581 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 SH3GLB1Q9Y371 365 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 SAMHD1Q9Y3Z3 626 aaKnown RBP9.39□□□□□ -0.91
SS18-210ENST00000578700 MMACHCQ9Y4U1 282 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 KLF2Q9Y5W3 355 aaPredicted RBP9.39□□□□□ -0.91
SS18-210ENST00000578700 CACNA1CQ13936 2221 aa9.39□□□□□ -0.91
SS18-210ENST00000578700 NAV3Q8IVL0 2385 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 TTC36A6NLP5 189 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 DNAJB6O75190 326 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 SEMG1P04279 462 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 FPR1P21462 350 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 GALNSP34059 522 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 PTGER1P34995 402 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 STT3AP46977 705 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 TPD52P55327 224 aaPredicted RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 KCNJ10P78508 379 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 VLDLRP98155 873 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 MAT1AQ00266 395 aaKnown RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 DUSP2Q05923 314 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 MAP4K2Q12851 820 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 ZNF155Q12901 538 aaPredicted RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 MFAP5Q13361 173 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 SYPL1Q16563 259 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms