RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 DOC2AQ14183 400 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 VAMP3Q15836 100 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 RNF113BQ8IZP6 322 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 NXPE1Q8N323 547 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 PXYLP1Q8TE99 480 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 EBPLQ9BY08 206 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 GHRLQ9UBU3 117 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 C1orf167Q5SNV9 1468 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 GPR39O43194 453 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 SRPX2O60687 465 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 ATP1B1P05026 303 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 CXCR3P49682 368 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 SUMO1P63165 101 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 HIST1H3AP68431 136 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 FAM109BQ6ICB4 259 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 DBX2Q6ZNG2 339 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 DNERQ8NFT8 737 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 PIGBQ92521 554 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 CPNE7Q9UBL6 633 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ABHD14A-ACY1A0A1B0GW23 586 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 PCDH7O60245 1069 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ZNF250P15622 560 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 BPIP17213 487 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 RIPPLY2Q5TAB7 128 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 LYPD8Q6UX82 237 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 MCEMP1Q8IX19 187 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 FAM71CQ8NEG0 241 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 XAGE5Q8WWM1 108 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 RSC1A1Q92681 617 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 TBC1D20Q96BZ9 403 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 KLHL15Q96M94 604 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 TMEM68Q96MH6 324 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ZNF587Q96SQ5 575 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 SLC6A7Q99884 636 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 NUDT16L1Q9BRJ7 211 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 TMEM131LA2VDJ0 1609 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 IL5P05113 134 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 DAPP51397 102 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ARSDP51689 593 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 CAMK2DQ13557 499 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 AMHR2Q16671 573 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 CTU2Q2VPK5 515 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 NUP188Q5SRE5 1749 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 MLIPQ5VWP3 458 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 LRFN4Q6PJG9 635 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 TTLL10Q6ZVT0 673 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ZNF248Q8NDW4 579 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 OR10D4PQ8NGN7 298 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 PITX2Q99697 317 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 WDR18Q9BV38 432 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 POLMQ9NP87 494 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 GSN-AS1Q9NRJ2 163 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 IGSF5Q9NSI5 407 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 PUS1Q9Y606 427 aaKnown RBP eCLIP5.92□□□□□ -1.46
CLK3-212ENST00000563418 RENP00797 406 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 GAAP10253 952 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 OAZ1P54368 228 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ACOT6Q3I5F7 207 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 THEM4Q5T1C6 240 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ARHGAP12Q8IWW6 846 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ZNF417Q8TAU3 575 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 FNDC9Q8TBE3 224 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 TOE1Q96GM8 510 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 SPIN2AQ99865 258 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 SPIN2BQ9BPZ2 258 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 SYT17Q9BSW7 474 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 GSTO2Q9H4Y5 243 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 LTN1O94822 1766 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 A0A1B0GTW7 788 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 SLC33A1O00400 549 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 CSO75390 466 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 POP7O75817 140 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 OLFM2O95897 454 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 RHOP08100 348 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 SH3BP2P78314 561 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 SMN1Q16637 294 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 PAGE3Q5JUK9 113 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 TIPARPQ7Z3E1 657 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 TMPRSS12Q86WS5 348 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 WDR20Q8TBZ3 569 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 FDXACB1Q9BRP7 624 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 SLC25A31Q9H0C2 315 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 QTRT2Q9H974 415 aaKnown RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 CRLF2Q9HC73 371 aa5.92□□□□□ -1.46
CLK3-212ENST00000563418 ZNF219Q9P2Y4 722 aaPredicted RBP5.92□□□□□ -1.46
CLK3-212ENST00000563418 TRBV2A0A0J9YWF9 115 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 RFPL4AA6NLU0 287 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 YDJCA8MPS7 323 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 RFPL4AL1F8VTS6 287 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 TMX2-CTNND1H3BSU7 103 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 SLC25A14O95258 325 aaPredicted RBP5.91□□□□□ -1.46
CLK3-212ENST00000563418 PTBP3O95758 552 aaKnown RBP5.91□□□□□ -1.46
CLK3-212ENST00000563418 HOXD4P09016 255 aaPredicted RBP5.91□□□□□ -1.46
CLK3-212ENST00000563418 USP17L7P0C7H9 530 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 ARL2P36404 184 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 C18orf63Q68DL7 685 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 PIGZQ86VD9 579 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 BOLLQ8N9W6 283 aaKnown RBP5.91□□□□□ -1.46
CLK3-212ENST00000563418 OR4K2Q8NGD2 314 aa5.91□□□□□ -1.46
CLK3-212ENST00000563418 DNASE1L2Q92874 299 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms