RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SLC9A8Q9Y2E8 581 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 PCDHGA10Q9Y5H3 936 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 ENPP4Q9Y6X5 453 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 CFAP54Q96N23 3096 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 NSG1A0A0A6YYJ2 146 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DCDC2BA2VCK2 349 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 CLDN24A6NM45 220 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 NPIPB9F8W1W9 429 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 M0R3H8 397 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DPM1O60762 260 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 ATP6V1G1O75348 118 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 KRT20P35900 424 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 YAP1P46937 504 aaKnown RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 ATP12AP54707 1039 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 NR1H2P55055 460 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 PLCXD2Q0VAA5 305 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 ZNF141Q15928 474 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 EIPR1Q53HC9 387 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 PDZK1Q5T2W1 519 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 C1QTNF12Q5T7M4 302 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 PLAG1Q6DJT9 500 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DTX1Q86Y01 620 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 RBM45Q8IUH3 476 aaKnown RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 LACC1Q8IV20 430 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 PRR22Q8IZ63 422 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 SLC34A3Q8N130 599 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 IL22RA1Q8N6P7 574 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 OR4C3Q8NH37 302 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 M1APQ8TC57 530 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 THAP3Q8WTV1 239 aaPredicted RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 DIO2Q92813 273 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 ARHGDIGQ99819 225 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 CIB1Q99828 191 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 COQ10BQ9H8M1 238 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 RLIMQ9NVW2 624 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 KCND3Q9UK17 655 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 OAZ3Q9UMX2 235 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 FAM32AQ9Y421 112 aaKnown RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 PCDHGA6Q9Y5G7 932 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 FAM186AA6NE01 2351 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 SDK2Q58EX2 2172 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 TMEM200CA6NKL6 621 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 J3KTA2 159 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 TSPAN2O60636 221 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 REM1O75628 298 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DNAJB5O75953 348 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DXOO77932 396 aaKnown RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 ZNF23P17027 643 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 RHCEP18577 417 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 SDHBP21912 280 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 ABCD3P28288 659 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 IL12BP29460 328 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 LCN1P31025 176 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 IST1P53990 364 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 NRG3P56975 720 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 CAMK2BQ13554 666 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 NRF1Q16656 503 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 MRPL2Q5T653 305 aaKnown RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 TCTN3Q6NUS6 607 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DEF8Q6ZN54 512 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 C16orf47Q6ZP98 133 aaPredicted RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 ZBTB49Q6ZSB9 765 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 EPHX4Q8IUS5 362 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 OR6T1Q8NGN1 323 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 ITPKCQ96DU7 683 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 OMA1Q96E52 524 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 ADOQ96SZ5 270 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 PIP5K1AQ99755 562 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 C9orf16Q9BUW7 83 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DEFB126Q9BYW3 111 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 HOXD1Q9GZZ0 328 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 RBM38Q9H0Z9 239 aaKnown RBP10.34□□□□□ -0.75
USP3-218ENST00000560202 ARMC7Q9H6L4 198 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 REEP1Q9H902 201 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 ZNF160Q9HCG1 818 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 MMP25Q9NPA2 562 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 UBQLN4Q9NRR5 601 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 VNN3Q9NY84 501 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 DTNAQ9Y4J8 743 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 U3KQV3 271 aa10.34□□□□□ -0.75
USP3-218ENST00000560202 CDHR4A6H8M9 788 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 H0YJX3 145 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 WWP2O00308 870 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 ADAMDEC1O15204 470 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 FRS3O43559 492 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 SEMA7AO75326 666 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 E2F6O75461 281 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 UTS2O95399 124 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 HNRNPCP07910 306 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP3-218ENST00000560202 CELA2AP08217 269 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 SMIM18P0DKX4 95 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 ZNF26P17031 533 aaPredicted RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 RRM2P31350 389 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 RNF144AP50876 292 aaPredicted RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 PNLIPRP2P54317 469 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 PPP1R8Q12972 351 aaKnown RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 IL10RAQ13651 578 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 RTP5Q14D33 572 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 NPTX1Q15818 432 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 PPP4R4Q6NUP7 873 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms