RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 MAGEA8P43361 318 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 FNTAP49354 379 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 CASP4P49662 377 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 STK19P49842 368 aaPredicted RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 NOVA1P51513 510 aaKnown RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 PRRX1P54821 245 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 PRMT2P55345 433 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 GNB1P62873 340 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 CYCSP99999 105 aaKnown RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 PLOD1Q02809 727 aaPredicted RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 RGS1Q08116 209 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 CCDC173Q0VFZ6 552 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 SRSF5Q13243 272 aaKnown RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 DOC2AQ14183 400 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 WDR43Q15061 677 aaKnown RBP eCLIP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 CYBRD1Q53TN4 286 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 ACER2Q5QJU3 275 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 MUC21Q5SSG8 566 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 PDZK1Q5T2W1 519 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 WLSQ5T9L3 541 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 PRAMEF5Q5TYX0 476 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 METTL11BQ5VVY1 283 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 PRAMEF6Q5VXH4 476 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 METAP1DQ6UB28 335 aaPredicted RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 APOOLQ6UXV4 268 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 KDM7AQ6ZMT4 941 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 HSD11B1LQ7Z5J1 315 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 SPATA24Q86W54 205 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 CARM1Q86X55 608 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 SAMD12Q8N8I0 201 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 OR9K2Q8NGE7 335 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 OR5L2Q8NGL0 311 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 OR1F12Q8NHA8 337 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 MRGPRDQ8TDS7 321 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 TBCKQ8TEA7 893 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 TMEM190Q8WZ59 177 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 NABP1Q96AH0 204 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 RASD2Q96D21 266 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 DNAJA3Q96EY1 480 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 C11orf24Q96F05 449 aaPredicted RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 C12orf66Q96MD2 445 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 NODALQ96S42 347 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 C19orf43Q9BQ61 176 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 FAM173AQ9BQD7 235 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 WACQ9BTA9 647 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 KRTAP1-5Q9BYS1 174 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 RNF41Q9H4P4 317 aaPredicted RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 XKR8Q9H6D3 395 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 RPRD1BQ9NQG5 326 aaKnown RBP2.62□□□□□ -1.99
TRAV28-201ENST00000557548 THYN1Q9P016 225 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 CYTH4Q9UIA0 394 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 ADAM28Q9UKQ2 775 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 IFT52Q9Y366 437 aa2.62□□□□□ -1.99
TRAV28-201ENST00000557548 PLEKHG2Q9H7P9 1386 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 NESP48681 1621 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 SMARCA4P51532 1647 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 TRGV8A0A0C4DH27 118 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 A0A1B0GVL5 298 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 MEIOCA2RUB1 952 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 SNTNA6NMZ2 147 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 ERVV-2B6SEH9 535 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 C11orf98E9PRG8 122 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 G3V4G9 280 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 FAM72CH0Y354 149 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 OR7A17O14581 309 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 CASC3O15234 703 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 NBR2O15453 112 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 CACNG3O60359 315 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 N4BP1O75113 896 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 SORBS2O94875 1100 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 LRATO95237 230 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 CA1P00915 261 aaPredicted RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 NPPAP01160 153 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 IGLV2-11P01706 119 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 SP1P08047 785 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 HOXB7P09629 217 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 ALOX5P09917 674 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 SLC2A3P11169 496 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 CCDC130P13994 396 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 PGCP20142 388 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 MX1P20591 662 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 CYP2B6P20813 491 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 CCT3P49368 545 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 HADHBP55084 474 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 RPS6P62753 249 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 RPL36AP83881 106 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 BDH1Q02338 343 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 ACY1Q03154 408 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 ZNF33BQ06732 778 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 FHL1Q13642 323 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 MESDQ14696 234 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 GANABQ14697 944 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 SSX2Q16385 188 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 MTHFSDQ2M296 383 aaKnown RBP2.61□□□□□ -1.99
TRAV28-201ENST00000557548 ZNF876PQ49A33 203 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 C1orf185Q5T7R7 199 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 ARMC12Q5T9G4 340 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 FAM72AQ5TYM5 149 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 PRAMEF20Q5VT98 475 aa2.61□□□□□ -1.99
TRAV28-201ENST00000557548 BSPRYQ5W0U4 402 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms