RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	OR51G2	Q8NGK0	314 aa		15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433	CNRIP1	Q96F85	164 aa	Predicted RBP	15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433	HHIPL1	Q96JK4	782 aa		15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433	MFRP	Q9BY79	579 aa		15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433	ABRACL	Q9P1F3	81 aa		15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433	ZNF624	Q9P2J8	865 aa	Predicted RBP	15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433	GPR55	Q9Y2T6	319 aa	Predicted RBP	15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433	CSNK1G3	Q9Y6M4	447 aa		15.19	■□□□□ 0.02
SHMT2-231	ENST00000557433		A0A1W2PR48	441 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	DAPL1	A0PJW8	107 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	UNC119B	A6NIH7	251 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	BTN3A3	O00478	584 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	SOCS6	O14544	535 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	LCMT2	O60294	686 aa	Known RBP	15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	TCRB	P04435	133 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	UGT2B7	P16662	529 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	PSMB5	P28074	263 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	GPR4	P46093	362 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	ELAVL3	Q14576	367 aa	Known RBP	15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	SMUG1	Q53HV7	270 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	SLC22A10	Q63ZE4	541 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	ABHD17C	Q6PCB6	329 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	ANKRD33	Q7Z3H0	272 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	PXK	Q7Z7A4	578 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	MEX3D	Q86XN8	651 aa	Known RBP	15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	CCDC116	Q8IYX3	515 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	GPR135	Q8IZ08	494 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	MS4A15	Q8N5U1	240 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	ZNF655	Q8N720	491 aa	Predicted RBP	15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	SLC2A12	Q8TD20	617 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	RAB7B	Q96AH8	199 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	ELP4	Q96EB1	424 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	ZSWIM3	Q96MP5	696 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	CMTM3	Q96MX0	182 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	SORCS2	Q96PQ0	1159 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	MTHFD2L	Q9H903	347 aa	Predicted RBP	15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	NUDT15	Q9NV35	164 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	UCKL1	Q9NWZ5	548 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	CES1P1	Q9UKY3	287 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	RASD1	Q9Y272	281 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	WNT6	Q9Y6F9	365 aa		15.18	■□□□□ 0.02
SHMT2-231	ENST00000557433	TEX13C	A0A0J9YWL9	993 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	LOC105371267	A0A1B0GV96	52 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	FAM86C2P	A6NEL3	165 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	EEF1E1	O43324	174 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	LANCL1	O43813	399 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	MOSPD3	O75425	235 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	SERPINA3	P01011	423 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	SAG	P10523	405 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	F3	P13726	295 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	ATP5A1	P25705	553 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	EPHA4	P54764	986 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	INSL4	Q14641	139 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	FAM214A	Q32MH5	1076 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	HNRNPA1L2	Q32P51	320 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TOR2A	Q5JU69	321 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	C6orf132	Q5T0Z8	1188 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TOMM5	Q8N4H5	51 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	SLC44A3	Q8N4M1	653 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	ACOT4	Q8N9L9	421 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	OR2L5	Q8NG80	312 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	OR11H7	Q8NGC8	314 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TRMT10A	Q8TBZ6	339 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	MS4A6E	Q96DS6	147 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TCEAL4	Q96EI5	215 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	C16orf58	Q96GQ5	468 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	SAMD8	Q96LT4	415 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	NECTIN4	Q96NY8	510 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	SARG	Q9BW04	601 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	QRSL1	Q9H0R6	528 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	PPIL3	Q9H2H8	161 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	CLEC4M	Q9H2X3	399 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	ISG20L2	Q9H9L3	353 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	PRDM7	Q9NQW5	492 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	LYAR	Q9NX58	379 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	NTM	Q9P121	344 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	ZNF222	Q9UK12	451 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	CHST2	Q9Y4C5	530 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	KCNE3	Q9Y6H6	103 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TBC1D3K	A0A087X1G2	549 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TRAV1-2	A0A0B4J238	106 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TBC1D3B	A6NDS4	549 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TBC1D3F	A6NER0	549 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	OR5K3	A6NET4	321 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	TUBAL3	A6NHL2	446 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	CTDSPL	O15194	276 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	GSTZ1	O43708	216 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	FZD7	O75084	574 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	STX11	O75558	287 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	SC5D	O75845	299 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	FGF18	O76093	207 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	AIFM1	O95831	613 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	RAB28	P51157	221 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	ACTC1	P68032	377 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	ACTA1	P68133	377 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	DYRK1A	Q13627	763 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	DHCR24	Q15392	516 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	SLC36A2	Q495M3	483 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	CLLU1	Q5K131	121 aa		15.17	■□□□□ 0.02
SHMT2-231	ENST00000557433	PRPF38B	Q5VTL8	546 aa	Known RBP	15.17	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms