RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 MIR1-1HGQ9H1L0 117 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 CHCHD3Q9NX63 227 aaKnown RBP17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 PRUNE2Q8WUY3 3088 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 GXYLT2A0PJZ3 443 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 OR5K3A6NET4 321 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 OR5K4A6NMS3 321 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 THEGLP0DJG4 465 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 NID1P14543 1247 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 ST6GAL1P15907 406 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 TNFSF8P32971 234 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 RORCP51449 518 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 CDC20Q12834 499 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 BBS1Q8NFJ9 593 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 OR4F15Q8NGB8 312 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 HTRA1Q92743 480 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 CTHRC1Q96CG8 243 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 IRAK4Q9NWZ3 460 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 CRNNQ9UBG3 495 aaPredicted RBP17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 CDH10Q9Y6N8 788 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 TRAPPC13A5PLN9 417 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 CDHR4A6H8M9 788 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 RDH16O75452 317 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 LYPD3O95274 346 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 TSPAN19P0C672 248 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 FUT1P19526 365 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 GABRA3P34903 492 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 CCR5P51681 352 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 HHEXQ03014 270 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 OR1Q1Q15612 314 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 LHFPL3Q86UP9 236 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 LAPTM4BQ86VI4 370 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 ZNF485Q8NCK3 441 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 ARSGQ96EG1 525 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 CCDC3Q9BQI4 270 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 TPK1Q9H3S4 243 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 RERGLQ9H628 205 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 ZNF223Q9UK11 482 aaPredicted RBP17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 NDRG2Q9UN36 371 aaKnown RBP17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 CLCA2Q9UQC9 943 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 EXOSC1Q9Y3B2 195 aaKnown RBP17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 SF3B6Q9Y3B4 125 aaKnown RBP17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 CSNK1G3Q9Y6M4 447 aa17.21■□□□□ 0.35
PRPF40B-208ENST00000548436 STK25O00506 426 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 CDRT1O95170 752 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 ZGLP1P0C6A0 271 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 CTSEP14091 401 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 RPS25P62851 125 aaKnown RBP17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 PLAURQ03405 335 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 MXD1Q05195 221 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 C22orf42Q6IC83 251 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 ZCCHC12Q6PEW1 402 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 HSDL2Q6YN16 418 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 ZAR1Q86SH2 424 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 OOSP2Q86WS3 158 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 OR2T33Q8NG76 320 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 OR9A4Q8NGU2 314 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 PFN4Q8NHR9 129 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 CEP19Q96LK0 163 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 SLC30A2Q9BRI3 323 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 GPR174Q9BXC1 333 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 DPH1Q9BZG8 443 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 SIAEQ9HAT2 523 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 GPR27Q9NS67 375 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 C20orf141Q9NUB4 165 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 TMEM131Q92545 1883 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 CBX7O95931 251 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 IGLV3-19P01714 112 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 SPNP16150 400 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 MAKP20794 623 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 RAB38P57729 211 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 FXYD6P3P58550 94 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 SRSF5Q13243 272 aaKnown RBP17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 TPBGQ13641 420 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 PLK5Q496M5 336 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 ARHGEF39Q8N4T4 335 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 RFKQ969G6 155 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 ARHGAP9Q9BRR9 750 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 UBQLN3Q9H347 655 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 CPNE5Q9HCH3 593 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 MED17Q9NVC6 651 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 ERVK13-1Q9NX77 482 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 CBLCQ9ULV8 474 aa17.2■□□□□ 0.34
PRPF40B-208ENST00000548436 LOC110117498-PIK3R3F6TDL0 507 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 H3BQ06 376 aaPredicted RBP17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 RGS5O15539 181 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 BRINP1O60477 761 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 LALBAP00709 142 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 CLEC2LP0C7M8 214 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 MSL3P1P0C860 447 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 SLC1A3P43003 542 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 GCGRP47871 477 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 POU6F2P78424 691 aaPredicted RBP17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 CLDN22Q8N7P3 220 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 ASB15Q8WXK1 588 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 ZNF649Q9BS31 505 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 TEX12Q9BXU0 123 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 ENKD1Q9H0I2 346 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 SEMA6CQ9H3T2 930 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 CAPN10Q9HC96 672 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 ISYNA1Q9NPH2 558 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms