RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 BCL2A1Q16548 175 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 AGBL2Q5U5Z8 902 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 RAET1LQ5VY80 246 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 ATG16L1Q676U5 607 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 OGFOD2Q6N063 350 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 WDR75Q8IWA0 830 aaKnown RBP13.38□□□□□ -0.27
USP28-204ENST00000537642 CLEC4FQ8N1N0 589 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 GATSQ8NAP1 163 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 OR5M1Q8NGP8 315 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 RAB3IL1Q8TBN0 382 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 ADAMTS15Q8TE58 950 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 TESCQ96BS2 214 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 MOAP1Q96BY2 351 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 C14orf79Q96F83 325 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 UCN2Q96RP3 112 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 SERHL2Q9H4I8 314 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 WDR55Q9H6Y2 383 aaPredicted RBP13.38□□□□□ -0.27
USP28-204ENST00000537642 MANSC1Q9H8J5 431 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 UBQLN4Q9NRR5 601 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 CLCF1Q9UBD9 225 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 ZNF629Q9UEG4 869 aaPredicted RBP13.38□□□□□ -0.27
USP28-204ENST00000537642 MARCOQ9UEW3 520 aaPredicted RBP13.38□□□□□ -0.27
USP28-204ENST00000537642 FAF1Q9UNN5 650 aaPredicted RBP13.38□□□□□ -0.27
USP28-204ENST00000537642 CSMD2Q7Z408 3487 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 OR2M5A3KFT3 312 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 DVL2O14641 736 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 HDAC3O15379 428 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 KRT16P08779 473 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 KITP10721 976 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 PEPDP12955 493 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 SSTR2P30874 369 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 CLDN15P56746 228 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 TMEM44Q2T9K0 475 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 DCST2Q5T1A1 773 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 ARSKQ6UWY0 536 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 ANKRD46Q86W74 232 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 OR5D16Q8NGK9 328 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 OR4A15Q8NGL6 344 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 TEX37Q96LM6 180 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 OR7D2Q96RA2 312 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 AIG1Q9NVV5 245 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 ZNF337Q9Y3M9 751 aa13.37□□□□□ -0.27
USP28-204ENST00000537642 NPIPA5A0A0B4J1W7 369 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 GOLGA8QA0A0J9YX86 632 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 RNF103-CHMP3A0A140T963 221 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 PRSS51A0A1B0GVH4 220 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 A0A1W2PQD3 144 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 GOLGA8OA6NCC3 632 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 SHISA8B8ZZ34 492 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 NPIPA7E9PJI5 369 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 GOLGA8NF8WBI6 632 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 H0YC42 278 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 SCDO00767 359 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 HCRTR2O43614 444 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 SOX30O94993 753 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 NPIPA8P0DM63 369 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 TMIGD3P0DMS9 266 aaPredicted RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 POU3F2P20265 443 aaPredicted RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 CTSSP25774 331 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 EPHA3P29320 983 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 AGFG1P52594 562 aaKnown RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 DGKQP52824 942 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 SUCLG1P53597 346 aaKnown RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 CLNS1AP54105 237 aaKnown RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 TPD52P55327 224 aaPredicted RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 NME5P56597 212 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 UFM1P61960 85 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 RPS26P62854 115 aaKnown RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 TLE4Q04727 773 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 FOXF2Q12947 444 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 CD226Q15762 336 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 GLYR1Q49A26 553 aaPredicted RBP13.36□□□□□ -0.27
USP28-204ENST00000537642 SPANXN4Q5MJ08 99 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 ANXA8L1Q5VT79 327 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 C6orf120Q7Z4R8 191 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 SPATA19Q7Z5L4 167 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 UBQLNLQ8IYU4 475 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 WNT2BQ93097 391 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 LURAP1Q96LR2 239 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 SH3GL2Q99962 352 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 KLHDC3Q9BQ90 382 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 PIGQQ9BRB3 760 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 VDAC3Q9Y277 283 aa13.36□□□□□ -0.27
USP28-204ENST00000537642 TRPC5OSA6NMA1 111 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 E9PBE3 544 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 SLCO1B7G3V0H7 640 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 H3BML4 177 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 LINC01387J3KSC0 135 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 SYT5O00445 386 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 KLF11O14901 512 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 RCBTB2O95199 551 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 CPSF4O95639 269 aaKnown RBP13.35□□□□□ -0.27
USP28-204ENST00000537642 IL18BPO95998 194 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 HPGDP15428 266 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 ATP6V1C1P21283 382 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 MATN1P21941 496 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 IL12AP29459 219 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 ASCL1P50553 236 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 KRTAP10-9P60411 292 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 DPY19L1Q2PZI1 675 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms