RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 SLC8B1Q6J4K2 584 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CGB2Q6NT52 195 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 SLC25A24Q6NUK1 477 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 C11orf63Q6NUN7 778 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 TTC23LQ6PF05 361 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 AFTPHQ6ULP2 937 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CCBE1Q6UXH8 406 aaPredicted RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 NLRP9Q7RTR0 991 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 TAF8Q7Z7C8 310 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CROCCP2Q86T23 111 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ITIH5Q86UX2 942 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 SPATA24Q86W54 205 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 SIAH3Q8IW03 269 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ZNF440Q8IYI8 595 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 BATF2Q8N1L9 274 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 DCLK2Q8N568 766 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 RNF10Q8N5U6 811 aaKnown RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 BMPERQ8N8U9 685 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 KIAA0895Q8NCT3 520 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 OR10G8Q8NGN5 311 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ANGPTL6Q8NI99 470 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 PYROXD1Q8WU10 500 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CHPT1Q8WUD6 406 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 SCFD1Q8WVM8 642 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ZNRF4Q8WWF5 429 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 THRSPQ92748 146 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 BCL2L2Q92843 193 aaPredicted RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 CASP10Q92851 521 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 HAUS1Q96CS2 278 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CCDC42Q96M95 316 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 NSMCE2Q96MF7 247 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 NSMCE3Q96MG7 304 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ZNF641Q96N77 438 aaPredicted RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 SFXN2Q96NB2 322 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 LRRC3BQ96PB8 259 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CBWD1Q9BRT8 395 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 SIKE1Q9BRV8 207 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CENPKQ9BS16 269 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 TDRD1Q9BXT4 1180 aaKnown RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 TRIM15Q9C019 465 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 BLZF1Q9H2G9 400 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CUEDC2Q9H467 287 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ATP13A3Q9H7F0 1226 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 MAGEF1Q9HAY2 307 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 Q9N2K0 584 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 PALMDQ9NP74 551 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 MRPL17Q9NRX2 175 aaKnown RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 P4HTMQ9NXG6 502 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 CHMP2BQ9UQN3 213 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 PRELID1Q9Y255 219 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ARL2BPQ9Y2Y0 163 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 STRAPQ9Y3F4 350 aaKnown RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 HBS1LQ9Y450 684 aaKnown RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 HYOU1Q9Y4L1 999 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 ZFC3H1O60293 1989 aaKnown RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 LAMA1P25391 3075 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 TDRD6O60522 2096 aaKnown RBP2.97□□□□□ -1.93
USP48-215ENST00000534705 ZNF292O60281 2723 aa2.97□□□□□ -1.93
USP48-215ENST00000534705 NUMA1Q14980 2115 aa2.96□□□□□ -1.93
USP48-215ENST00000534705 SF3B1O75533 1304 aaKnown RBP eCLIP2.96□□□□□ -1.933e-6■■■■□ 20.7
USP48-215ENST00000534705 UBE4BO95155 1302 aa2.96□□□□□ -1.93
USP48-215ENST00000534705 FAM186AA6NE01 2351 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 DMXL1Q9Y485 3027 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 SDK1Q7Z5N4 2213 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 A0A1W2PPQ1 181 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 GOLGA8IPA6NC78 632 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 GOLGA8JA6NMD2 632 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 CENPBD1B2RD01 187 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 TMEM114B3SHH9 223 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 C2CD4DB7Z1M9 353 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 ZNF701M0R085 212 aaPredicted RBP2.96□□□□□ -1.94
USP48-215ENST00000534705 CETN3O15182 167 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 SPRY1O43609 319 aaPredicted RBP2.96□□□□□ -1.94
USP48-215ENST00000534705 AKAP3O75969 853 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 KRT33AO76009 404 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 B3GAT3O94766 335 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 SEC24AO95486 1093 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 MT-ATP6P00846 226 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 AGTP01019 485 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 IGHV2-70P01814 119 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 SHBGP04278 402 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 SERPING1P05155 500 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 RAB40ALP0C0E4 278 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 TRIM49P0CI25 452 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 TRIM49CP0CI26 452 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 C8orf89P0DMQ9 161 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 GP1BBP13224 206 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 AREGP15514 252 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 HOXB8P17481 243 aaPredicted RBP2.96□□□□□ -1.94
USP48-215ENST00000534705 RPL9P32969 192 aaKnown RBP2.96□□□□□ -1.94
USP48-215ENST00000534705 OR1D2P34982 312 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 SERPINB6P35237 376 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 SYKP43405 635 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 BCAP31P51572 246 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 RAP1GDS1P52306 607 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 HNRNPFP52597 415 aaKnown RBP2.96□□□□□ -1.94
USP48-215ENST00000534705 SLC18A1P54219 525 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 ATP6V0D1P61421 351 aa2.96□□□□□ -1.94
USP48-215ENST00000534705 BASP1P80723 227 aaKnown RBP2.96□□□□□ -1.94
USP48-215ENST00000534705 SLC34A1Q06495 639 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms