RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FHL5Q5TD97 284 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 ZCCHC12Q6PEW1 402 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 SYCE2Q6PIF2 218 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 ZNF322Q6U7Q0 402 aaPredicted RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 BBS1Q8NFJ9 593 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 OR52L1Q8NGH7 329 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 PMM1Q92871 262 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 SLC35B4Q969S0 331 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 RPP25Q9BUL9 199 aaKnown RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 TMED9Q9BVK6 235 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 TBC1D17Q9HA65 648 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 HINT3Q9NQE9 182 aaKnown RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 DUSP22Q9NRW4 184 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 PILRAQ9UKJ1 303 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 SPACA6W5XKT8 324 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 TNFRSF10CO14798 259 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 SLC2A10O95528 541 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 GSTT2P0CG29 244 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 GSTT2BP0CG30 244 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 NID1P14543 1247 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 DAB2P98082 770 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 TRMT12Q53H54 448 aaKnown RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 CDRT4Q8N9R6 151 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 SIMC1Q8NDZ2 872 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 NEIL3Q8TAT5 605 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 DNAJA4Q8WW22 397 aaPredicted RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 SPRYD4Q8WW59 207 aaPredicted RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 TSACCQ96A04 125 aaPredicted RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 SIPA1Q96FS4 1042 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 PHOX2BQ99453 314 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 CD180Q99467 661 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 PRSS27Q9BQR3 290 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 TRBV23OR9-2A0A075B6M9 112 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 MEIOCA2RUB1 952 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 A6NCN8 305 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 GABRPO00591 440 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 FMO6PO60774 539 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 ATP1B1P05026 303 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 PAICSP22234 425 aaKnown RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 NR4A2P43354 598 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 RNF144AP50876 292 aaPredicted RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 NKX2-5P52952 324 aaPredicted RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 TCEA2Q15560 299 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 EXOSC6Q5RKV6 272 aaKnown RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 DCST2Q5T1A1 773 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 FCRL6Q6DN72 434 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 RPL13AP3Q6NVV1 102 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 MZT2AQ6P582 158 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 MARCH9Q86YJ5 346 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 CCL4L1Q8NHW4 92 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 STACQ99469 402 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 HDHD5Q9BXW7 423 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 OR2B2Q9GZK3 357 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 TMEM168Q9H0V1 697 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 OR52D1Q9H346 318 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 SIDT1Q9NXL6 827 aaKnown RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 ACTR10Q9NZ32 417 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 COMMD3Q9UBI1 195 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 IL20RAQ9UHF4 553 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 LINC00854A0A1B0GVQ3 168 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 A8MU76 341 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 J3QRE1 110 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 PLOD3O60568 738 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 SNRNP200O75643 2136 aaKnown RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 AK1P00568 194 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 BMP7P18075 431 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 COL9A1P20849 921 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 DDOSTP39656 456 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 NDUFA5Q16718 116 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 ZNF791Q3KP31 576 aaPredicted RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 ATAD3CQ5T2N8 411 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 CCNJQ5T5M9 372 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 TMEM184AQ6ZMB5 413 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 RDH10Q8IZV5 341 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 VWA5B2Q8N398 1253 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 ACBD7Q8N6N7 88 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 FANK1Q8TC84 345 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 TMEM239Q8WW34 195 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 RERGQ96A58 199 aaPredicted RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 HS6ST2Q96MM7 605 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 DEPDC7Q96QD5 511 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 ZFYVE21Q9BQ24 234 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 SOSTQ9BQB4 213 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 ADAP2Q9NPF8 381 aa19.75■□□□□ 0.75
VPS28-205ENST00000526204 ZNF223Q9UK11 482 aaPredicted RBP19.75■□□□□ 0.75
VPS28-205ENST00000526204 SMIM30A4D0T7 59 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 HMX3A6NHT5 357 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 SOCS6O14544 535 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 HCN1O60741 890 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 ZGLP1P0C6A0 271 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 POLR2CP19387 275 aaPredicted RBP19.74■□□□□ 0.75
VPS28-205ENST00000526204 OR1Q1Q15612 314 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 MRPL2Q5T653 305 aaKnown RBP19.74■□□□□ 0.75
VPS28-205ENST00000526204 LCN1P1Q5VSP4 162 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 ANKRD54Q6NXT1 300 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 MEPCEQ7L2J0 689 aaKnown RBP19.74■□□□□ 0.75
VPS28-205ENST00000526204 CDK20Q8IZL9 346 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 ATP6V1C2Q8NEY4 427 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 ZFPM2Q8WW38 1151 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 RSC1A1Q92681 617 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms