RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 UBE2UQ5VVX9 321 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CES4AQ5XG92 561 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 HBMQ6B0K9 141 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ARPC5LQ9BPX5 153 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 LCKP06239 509 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CSKP41240 450 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF74Q16587 644 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 GPR150Q8NGU9 434 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ZCCHC4Q9H5U6 513 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 C2orf72A6NCS6 295 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ENPP3O14638 875 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 FBXO48Q5FWF7 155 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CRTC1Q6UUV9 634 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 OR13C4Q8NGS5 318 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 MICU1Q9BPX6 476 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ADAM19Q9H013 955 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 TLR9Q9NR96 1032 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CEPT1Q9Y6K0 416 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 LRIT2A6NDA9 550 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 VNN1O95497 513 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 AQP2P41181 271 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 RPS21P63220 83 aaKnown RBP12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CSNK2A1P68400 391 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-209ENST00000472056 RNF212Q495C1 297 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CPZQ66K79 652 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CSNK2A3Q8NEV1 391 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 DAZAP1Q96EP5 407 aaKnown RBP12.61□□□□□ -0.39
COL6A3-209ENST00000472056 HS3ST4Q9Y661 456 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 STYXL1Q9Y6J8 313 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ATAD5Q96QE3 1844 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 TSPAN6O43657 245 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 DIRAS1O95057 198 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CNR1P21554 472 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CD276Q5ZPR3 534 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 DDX1Q92499 740 aaKnown RBP12.61□□□□□ -0.39
COL6A3-209ENST00000472056 PCDHGA7Q9Y5G6 932 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 LOC102725191A0A1B0GVB3 256 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 K7EPK0 472 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 WNT7AO00755 349 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ANGPTL7O43827 346 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 DHRS4L1P0CG22 281 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ADH5P11766 374 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 EFNA1P20827 205 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-209ENST00000472056 OR1E2P47887 323 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 FAM71E2Q8N5Q1 922 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 VPS25Q9BRG1 176 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 TXLNGYQ9BZA5 131 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 Q9Y3F1 56 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 ASGR2P07307 311 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 PRKACGP22612 351 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 BTN1A1Q13410 526 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 RCBTB1Q8NDN9 531 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 PRRC1Q96M27 445 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 UHRF2Q96PU4 802 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CD84Q9UIB8 345 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 SERTAD2Q14140 314 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 C5orf46Q6UWT4 87 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 UMODL1-AS1Q8N2C9 162 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 OR1S1Q8NH92 325 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 OR1E3Q8WZA6 343 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 CERS4Q9HA82 394 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 CHRNA9Q9UGM1 479 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 ARGFXA6NJG6 315 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 EEF1E1-BLOC1S5C9J1V9 151 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 ARHGAP40Q5TG30 622 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 TMPRSS7Q7RTY8 843 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 PXT1Q8NFP0 134 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 CYB5R1Q9UHQ9 305 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 IL33O95760 270 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 ALPIP09923 528 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 ACVR1BP36896 505 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 UBE2KP61086 200 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 TMEM244Q5VVB8 128 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 RNF113BQ8IZP6 322 aaKnown RBP12.6□□□□□ -0.39
COL6A3-209ENST00000472056 OR5D16Q8NGK9 328 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 NDNFQ8TB73 568 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 OR11A1Q9GZK7 315 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 OPA3Q9H6K4 179 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 CPNE7Q9UBL6 633 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 V9GY05 133 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 C2orf78A6NCI8 922 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 RGS11O94810 467 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 C6P13671 934 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 TAS2R38P59533 333 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 EEF1A1P68104 462 aaKnown RBP12.6□□□□□ -0.39
COL6A3-209ENST00000472056 ZMAT1Q5H9K5 638 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 EEF1A1P5Q5VTE0 462 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF679Q8IYX0 411 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 OR5H6Q8NGV6 325 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 TANKQ92844 425 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 MCOLN1Q9GZU1 580 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 MRPL10Q7Z7H8 261 aaKnown RBP12.6□□□□□ -0.39
COL6A3-209ENST00000472056 GLB1L2Q8IW92 636 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 PITX2Q99697 317 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 LMF2Q9BU23 707 aaKnown RBP12.6□□□□□ -0.39
COL6A3-209ENST00000472056 AHCTF1Q8WYP5 2266 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 CD63P08962 238 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 TLE1Q04724 770 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 AMZ1Q400G9 498 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 CMSS1Q9BQ75 279 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms