RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 H7C1Q1 480 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 NR5A2O00482 541 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 TP53I11O14683 189 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 NKX2-2O95096 273 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 KRT16P08779 473 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 ALOX5P09917 674 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 ACP2P11117 423 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 KRT20P35900 424 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 CDKN2CP42773 168 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 DNASE1L1P49184 302 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 FBXW4P57775 412 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 FOXO1Q12778 655 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 GAB1Q13480 694 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC10A1Q14973 349 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 CYP27C1Q4G0S4 372 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 GXYLT1Q4G148 440 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 FLYWCH1Q4VC44 716 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 AGKQ53H12 422 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 CDC73Q6P1J9 531 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 NUP54Q7Z3B4 507 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 LIX1LQ8IVB5 337 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM109AQ8N4B1 249 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 TMEM251Q8N6I4 163 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 TRIML2Q8N7C3 387 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC16A11Q8NCK7 471 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM13CQ8NE31 585 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 OR4N2Q8NGD1 307 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM222BQ8WU58 562 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC9A6Q92581 669 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 JADE3Q92613 823 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 VPS33AQ96AX1 596 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SPDL1Q96EA4 605 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC35A4Q96G79 324 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 C16orf58Q96GQ5 468 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SECISBP2Q96T21 854 aaKnown RBP10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 STACQ99469 402 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 YIPF4Q9BSR8 244 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 INPP5KQ9BT40 448 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 ACTRT3Q9BYD9 372 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 PLEKHF2Q9H8W4 249 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC52A3Q9NQ40 469 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SERHLQ9NQF3 203 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 GIN1Q9NXP7 522 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 CBLCQ9ULV8 474 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 FAF1Q9UNN5 650 aaPredicted RBP10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 ARID1AO14497 2285 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 A0A0G2JMM0 328 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 A0A1B0GVC2 190 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 A0A1W2PPB8 328 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 A0A1W2PRS3 328 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 ANKRD33BA6NCL7 494 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM166BA8MTA8 275 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 KIR3DP1A8MWS1 328 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 G3V3Y1 287 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 RFXANKO14593 260 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 BCKDKO14874 412 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SUSD5O60279 629 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 TSPAN2O60636 221 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 ABCB7O75027 752 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 UGT2B11O75310 529 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 CRLF1O75462 422 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 REM1O75628 298 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SOX30O94993 753 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 CD53P19397 219 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 DRD4P21917 467 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 IL12BP29460 328 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 GABRA3P34903 492 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 PIGAP37287 484 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 MAGEA5P43359 124 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 PNLIPRP2P54317 469 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 RPP38P78345 283 aaKnown RBP10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 DUSP5Q16690 384 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 DECR1Q16698 335 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC25A35Q3KQZ1 300 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 FBXW10Q5XX13 1052 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SAXO2Q658L1 398 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 DNAJC14Q6Y2X3 702 aaPredicted RBP10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 C6orf120Q7Z4R8 191 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SPATA21Q7Z572 469 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 CLEC4FQ8N1N0 589 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 FBXW8Q8N3Y1 598 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 FBXO30Q8TB52 745 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SPPL2AQ8TCT8 520 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 GPR151Q8TDV0 419 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 PIK3R3Q92569 461 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 HGDQ93099 445 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 NEURL3Q96EH8 262 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 ITCHQ96J02 903 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC35G5Q96KT7 338 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 COL21A1Q96P44 957 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 ELAC2Q9BQ52 826 aaKnown RBP10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC35A5Q9BS91 424 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 TTYH2Q9BSA4 534 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 BDH2Q9BUT1 245 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM107BQ9H098 131 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 PIGUQ9H490 435 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 DUSP22Q9NRW4 184 aa10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 TUBA8Q9NY65 449 aaPredicted RBP10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 MRTO4Q9UKD2 239 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms