RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ZNF578Q96N58 590 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 LRRN3Q9H3W5 708 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 TAS2R10Q9NYW0 307 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 A0A1B0GVI7 797 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 FAM240BA0A1B0GVZ2 78 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 A0A1W2PR48 441 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 FABP12A6NFH5 140 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CLDN25C9JDP6 229 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TSC22D2O75157 780 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 NME1P15531 152 aaKnown RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TCN2P20062 427 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MAP2K4P45985 399 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CHAF1BQ13112 559 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 GK3PQ14409 553 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 PRAMEF8Q5VWM4 474 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 PRAMEF7Q5VXH5 474 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 PNLDC1Q8NA58 520 aaKnown RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 OR4C15Q8NGM1 316 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 OR2T4Q8NH00 348 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ACOT11Q8WXI4 607 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 PIGUQ9H490 435 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 NKIRAS2Q9NYR9 191 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MALT1Q9UDY8 824 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CARD8Q9Y2G2 431 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TRPM6Q9BX84 2022 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 DENRO43583 198 aaKnown RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TMPRSS11DO60235 418 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ENTPD6O75354 484 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 H2BFMP0C1H6 154 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MYF5P13349 255 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 F8A1P23610 371 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 KIR2DL1P43626 348 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 HSD17B7P56937 341 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 PRPS1P60891 318 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 OR1Q1Q15612 314 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ALG10Q5BKT4 473 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 LRIF1Q5T3J3 769 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 EEF1A1P5Q5VTE0 462 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 UEVLDQ8IX04 471 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ZFP3Q96NJ6 502 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SLC46A1Q96NT5 459 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MROQ9BYG7 248 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 DDX31Q9H8H2 851 aaKnown RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CLEC1BQ9P126 229 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SPATA2Q9UM82 520 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 FKBP7Q9Y680 259 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TMEM14AQ9Y6G1 99 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 A0A1W2PRQ8 180 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SAGE2PA6NJ88 616 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TFECO14948 347 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TPD52L2O43399 206 aaKnown RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SSNA1O43805 119 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 OR2T1O43869 369 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MT-ND2P03891 347 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SLITRK4Q8IW52 837 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MMP21Q8N119 569 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 GPR137CQ8N3F9 429 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 JAGN1Q8N5M9 183 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ACBD7Q8N6N7 88 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 LCORQ96JN0 433 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 LMF2Q9BU23 707 aaKnown RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 RXFP3Q9NSD7 469 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SACM1LQ9NTJ5 587 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MAGED1Q9Y5V3 778 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 A0A1B0GTL3 188 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CIB4A0PJX0 185 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SLC35F4A4IF30 521 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 J3KTA2 159 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SLC1A7O00341 560 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ANKRD28O15084 1053 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 PIAS2O75928 621 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CDRT1O95170 752 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 GRPRP30550 384 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ARRB2P32121 409 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TRIM23P36406 574 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MTNR1AP48039 350 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MNX1P50219 401 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 POU4F2Q12837 409 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 APOFQ13790 326 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 FZD2Q14332 565 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 PODNL1Q6PEZ8 512 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TMEM64Q6YI46 380 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 C1orf210Q8IVY1 113 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 BPIFA2Q96DR5 249 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CDC6Q99741 560 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 HEMK1Q9Y5R4 338 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 KNTC1P50748 2209 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CCRL2O00421 344 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF264O43296 627 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 ALOX12BO75342 701 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 CSF2P04141 144 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 RLN1P04808 185 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 S1PR1P21453 382 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 MYF6P23409 242 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 S100GP29377 79 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 TUBA3CQ13748 450 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 GAS6Q14393 721 aa6.92□□□□□ -1.3
SYNE1-213ENST00000448038 SMAD2Q15796 467 aaKnown RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 YOD1Q5VVQ6 348 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-213ENST00000448038 WBP2NLQ6ICG8 309 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms