RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 RPS19P39019 145 aaKnown RBP7.8□□□□□ -1.16
CD44-208ENST00000428726 RGS6P49758 472 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 FAM53BQ14153 422 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 SSX1Q16384 188 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 PLBD1Q6P4A8 553 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 WDR88Q6ZMY6 472 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 KRT73Q86Y46 540 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 TBC1D19Q8N5T2 526 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 OR2I1PQ8NGU4 316 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 NUAK2Q9H093 628 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 SAP130Q9H0E3 1048 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 S1PR5Q9H228 398 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 UCKL1Q9NWZ5 548 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 REV1Q9UBZ9 1251 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 KCNE5Q9UJ90 142 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 B3GNT3Q9Y2A9 372 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 MPDZO75970 2070 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 A0A087WV48 116 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 IGHV3-20A0A0C4DH32 117 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 ARRDC5A6NEK1 342 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 ASNA1O43681 348 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 CDRT1O95170 752 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 ALPPP05187 535 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 DCNP07585 359 aaKnown RBP7.8□□□□□ -1.16
CD44-208ENST00000428726 CELP19835 753 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 FRKP42685 505 aaPredicted RBP7.8□□□□□ -1.16
CD44-208ENST00000428726 LIMS1P48059 325 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 TRA2BP62995 288 aaKnown RBP7.8□□□□□ -1.16
CD44-208ENST00000428726 ADAM15Q13444 863 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 LRIT3Q3SXY7 679 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 CCDC92Q53HC0 331 aaPredicted RBP7.8□□□□□ -1.16
CD44-208ENST00000428726 METAP1DQ6UB28 335 aaPredicted RBP7.8□□□□□ -1.16
CD44-208ENST00000428726 GDPD3Q7L5L3 318 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 NRARPQ7Z6K4 114 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 COX18Q8N8Q8 333 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 UBASH3BQ8TF42 649 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 RERGQ96A58 199 aaPredicted RBP7.8□□□□□ -1.16
CD44-208ENST00000428726 VMP1Q96GC9 406 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 COMMD3Q9UBI1 195 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 TICRRQ7Z2Z1 1910 aa7.8□□□□□ -1.16
CD44-208ENST00000428726 CSO75390 466 aaKnown RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 CLEC3AO75596 197 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 GIPRP48546 466 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 ZNF155Q12901 538 aaPredicted RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 HTR4Q13639 388 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 IRF3Q14653 427 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 NFATC4Q14934 902 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 TBCEQ15813 527 aaPredicted RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 FLYWCH1Q4VC44 716 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 RNF44Q7L0R7 432 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 LAX1Q8IWV1 398 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 CSNK1A1LQ8N752 337 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 CLDN22Q8N7P3 220 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 TTLQ8NG68 377 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 OR4K14Q8NGD5 310 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 OR13C5Q8NGS8 318 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 OR13C2Q8NGS9 318 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 S100ZQ8WXG8 99 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 CNOT9Q92600 299 aaKnown RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 SLC38A4Q969I6 547 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 ELSPBP1Q96BH3 223 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 MMABQ96EY8 250 aaPredicted RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 OR2A5Q96R48 311 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 GAL3ST4Q96RP7 486 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 CDADC1Q9BWV3 514 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 RAB11FIP5Q9BXF6 653 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 ISG20L2Q9H9L3 353 aaKnown RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 ACSS1Q9NUB1 689 aaPredicted RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 FLRT3Q9NZU0 649 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 FTSJ1Q9UET6 329 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 GRIP1Q9Y3R0 1128 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 TMEM184BQ9Y519 407 aaPredicted RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 TAF4O00268 1085 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 RFPL3O75679 317 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 WISP1O95388 367 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 ACP2P11117 423 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 NOS3P29474 1203 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 PI4KAP42356 2102 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 RPS25P62851 125 aaKnown RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 RGS1Q08116 209 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 SNTA1Q13424 505 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 ENPP2Q13822 863 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 MLC1Q15049 377 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 LPAL2Q16609 132 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 CRTC2Q53ET0 693 aaPredicted RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 PDZK1Q5T2W1 519 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 MRPL2Q5T653 305 aaKnown RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 ZNF770Q6IQ21 691 aaPredicted RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 CPOQ8IVL8 374 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 C10orf53Q8N6V4 93 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 RCBTB1Q8NDN9 531 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 OR52R1Q8NGF1 315 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 RASSF5Q8WWW0 418 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 KLHL6Q8WZ60 621 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 TM9SF4Q92544 642 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 TIMM29Q9BSF4 260 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 KIR3DX1Q9H7L2 352 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 LMAN1LQ9HAT1 526 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 PNO1Q9NRX1 252 aaKnown RBP7.79□□□□□ -1.16
CD44-208ENST00000428726 DZANK1Q9NVP4 752 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms