RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 DNASE1L3Q13609 305 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 EFR3AQ14156 821 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 GANABQ14697 944 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 EXT1Q16394 746 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 EXOC3L2Q2M3D2 409 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CT45A2Q5DJT8 189 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 COLEC12Q5KU26 742 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 PDZK1Q5T2W1 519 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 TMEM205Q6UW68 189 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 HSDL2Q6YN16 418 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 OLIG3Q7RTU3 272 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF550Q7Z398 422 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 HMGN2P46Q86SG4 172 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF605Q86T29 641 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF440Q8IYI8 595 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 LINC00471Q8N535 108 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 BCORP1Q8N888 145 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF555Q8NEP9 628 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NUBPLQ8TB37 319 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 MAGEE2Q8TD90 523 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF721Q8TF20 911 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 GIPC3Q8TF64 312 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CT55Q8WUE5 264 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CYGBQ8WWM9 190 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 SLC35B4Q969S0 331 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 EFHD2Q96C19 240 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 HSPBAP1Q96EW2 488 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 FNDC11Q9BVV2 318 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NUDT9Q9BW91 350 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 FAM117AQ9C073 453 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 SEMA4CQ9C0C4 833 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 AMBRA1Q9C0C7 1298 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 B3GNT4Q9C0J1 378 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 SAP130Q9H0E3 1048 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NXF5Q9H1B4 397 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ANKRD19PQ9H560 264 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 MTHFD2LQ9H903 347 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 POLR1BQ9H9Y6 1135 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF556Q9HAH1 456 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 VNN3Q9NY84 501 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 SELENONQ9NZV5 590 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 PDP1Q9P0J1 537 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 KCND3Q9UK17 655 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 POFUT2Q9Y2G5 429 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 GPR55Q9Y2T6 319 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 KCNE3Q9Y6H6 103 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 AK5Q9Y6K8 562 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CEP250Q9BV73 2442 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 FRYLO94915 3013 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 LOC102723996A0A087X1L8 192 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 NSG1A0A0A6YYJ2 146 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 IGHV3-20A0A0C4DH32 117 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 TEX51A0A1B0GUA7 166 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 SPAARA0A1B0GVQ0 90 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 A0A1W2PQ72 361 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 CDHR4A6H8M9 788 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 FIGNL2A6NMB9 653 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 TMEM229AB2RXF0 380 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 C9orf172C9J069 976 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 PEX12O00623 359 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 BCKDKO14874 412 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 TO15178 435 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 FRS3O43559 492 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 RAD1O60671 282 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 DKK1O94907 266 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 ITGAMP11215 1152 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 UBL4AP11441 157 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 COX6A1P12074 109 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 ANXA8P13928 327 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF26P17031 533 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-202ENST00000419110 DRD5P21918 477 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 TGM1P22735 817 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 RBMS1P29558 406 aaKnown RBP5.5□□□□□ -1.53
HMGB3-202ENST00000419110 OTX2P32243 289 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 IFNGR2P38484 337 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 CLK3P49761 638 aaKnown RBP5.5□□□□□ -1.53
HMGB3-202ENST00000419110 CCR4P51679 360 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 GPR143P51810 404 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 NR0B1P51843 470 aaKnown RBP5.5□□□□□ -1.53
HMGB3-202ENST00000419110 EFNA3P52797 238 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 IST1P53990 364 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 ATP12AP54707 1039 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 CLDN6P56747 220 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 RPS15P62841 145 aaKnown RBP5.5□□□□□ -1.53
HMGB3-202ENST00000419110 IL1RL1Q01638 556 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 ST3GAL3Q11203 375 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 FGFBP1Q14512 234 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 TRAM2Q15035 370 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 PCOLCEQ15113 449 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF141Q15928 474 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 DUSP7Q16829 419 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 BTBD16Q32M84 506 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 DCST1Q5T197 706 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 C6orf52Q5T4I8 152 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF517Q6ZMY9 492 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-202ENST00000419110 SLCO6A1Q86UG4 719 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 TMPRSS12Q86WS5 348 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 LACC1Q8IV20 430 aa5.5□□□□□ -1.53
HMGB3-202ENST00000419110 CHERPQ8IWX8 916 aaKnown RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms