RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PNLIPRP2P54317 469 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 OR1Q1Q15612 314 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 FHL5Q5TD97 284 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 C1orf94Q6P1W5 598 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 OR6T1Q8NGN1 323 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 PIK3R3Q92569 461 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 SGTBQ96EQ0 304 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 TMEM121BQ9BXQ6 578 aaPredicted RBP7.79□□□□□ -1.16
USP54-203ENST00000418501 DEFB126Q9BYW3 111 aa7.79□□□□□ -1.16
USP54-203ENST00000418501 EXOSC1Q9Y3B2 195 aaKnown RBP7.79□□□□□ -1.16
USP54-203ENST00000418501 CLCA1A8K7I4 914 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 HCRTR1O43613 425 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 MITFO75030 526 aaPredicted RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 TRIM3O75382 744 aaPredicted RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 BCL10O95999 233 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ZNF3P17036 446 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 CXCR1P25024 350 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 FOLR3P41439 243 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 POU4F2Q12837 409 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 DGUOKQ16854 277 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PRSS53Q2L4Q9 553 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ARHGAP11AQ6P4F7 1023 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TMPRSS11AQ6ZMR5 421 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ZNF367Q7RTV3 350 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 C10orf111Q8N326 155 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 B4GALNT2Q8NHY0 566 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SLC2A12Q8TD20 617 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ZNF501Q96CX3 271 aaPredicted RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 DEPDC7Q96QD5 511 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TSSK6Q9BXA6 273 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SLC25A19Q9HC21 320 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TVP23BQ9NYZ1 205 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 DHCR7Q9UBM7 475 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 B4E171 279 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 HRO43593 1189 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 NDUFB5O43674 189 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 CBX7O95931 251 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SP9P0CG40 484 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 FOLR1P15328 257 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 MAOAP21397 527 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SOX6P35712 828 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TSPAN7P41732 249 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PCYT1AP49585 367 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ISL1P61371 349 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 DMWDQ09019 674 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PTGES3Q15185 160 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 ANGPT1Q15389 498 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PGBD2Q6P3X8 592 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 AHSA2Q719I0 299 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 HS3ST5Q8IZT8 346 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SLC15A4Q8N697 577 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TMEM80Q96HE8 168 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 POLDIP3Q9BY77 421 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 WDR54Q9H977 334 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 C12orf10Q9HB07 376 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 C11orf16Q9NQ32 467 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 EXOSC3Q9NQT5 275 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 NCDNQ9UBB6 729 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SEC14L4Q9UDX3 406 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TMEFF2Q9UIK5 374 aaPredicted RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 SLC22A1O15245 554 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 HK1P19367 917 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 MSX1P28360 303 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 GSTT1P30711 240 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SLC5A2P31639 672 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 GRK5P34947 590 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 RPL4P36578 427 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 GABRA4P48169 554 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PRPS1P60891 318 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 RPS15P62841 145 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 FGFBP1Q14512 234 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ALG10BQ5I7T1 473 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 OVCH1Q7RTY7 1134 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ARHGAP22Q7Z5H3 698 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SATL1Q86VE3 508 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ERI1Q8IV48 349 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 PRSS58Q8IYP2 241 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 GPR32P1Q8NGA4 272 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 OR9Q2Q8NGE9 314 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 OR8K3Q8NH51 312 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 FANK1Q8TC84 345 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 NUDT22Q9BRQ3 303 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TIMMDC1Q9NPL8 285 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 SLC7A7Q9UM01 511 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 TRBV4-1A0A0J9YWV2 114 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 CDHR4A6H8M9 788 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 GASTP01350 101 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PIPP12273 146 aaPredicted RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 FKBP2P26885 142 aaKnown RBP7.78□□□□□ -1.16
USP54-203ENST00000418501 ELK4P28324 431 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 AVPR2P30518 371 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 FMO3P31513 532 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 CBFBQ13951 182 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 KCNAB1Q14722 419 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 LAPTM4AQ15012 233 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 OCLNQ16625 522 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PDZK1Q5T2W1 519 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 PRSS41Q7RTY9 318 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 ADCK1Q86TW2 530 aa7.78□□□□□ -1.16
USP54-203ENST00000418501 OR1N1Q8NGS0 311 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms