RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 IL1RAPQ9NPH3 570 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 FLRT3Q9NZU0 649 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 AP4S1Q9Y587 144 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 NCOR2Q9Y618 2525 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 FREM2Q5SZK8 3169 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 NPIPA5A0A0B4J1W7 369 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 NPIPA7E9PJI5 369 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 H3BNX3 289 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 SCDO00767 359 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 TP53I11O14683 189 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 CEACAM4O75871 244 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 NPIPA8P0DM63 369 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 ERFP50548 548 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 HLCSP50747 726 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 FBXW4P57775 412 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 KCNC4Q03721 635 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 TLE3Q04726 772 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 NRF1Q16656 503 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 IQCCQ4KMZ1 466 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 ABHD17BQ5VST6 288 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 B3GNTL1Q67FW5 361 aaPredicted RBP13.08□□□□□ -0.32
SF3B1-204ENST00000414963 DESI1Q6ICB0 168 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 APOOLQ6UXV4 268 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 CCDC81Q6ZN84 652 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF836Q6ZNA1 936 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 FKBP9P1Q75LS8 142 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 COMTD1Q86VU5 262 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 CLIP4Q8N3C7 705 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 POGLUT1Q8NBL1 392 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 OR10Q1Q8NGQ4 319 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 PYDC1Q8WXC3 89 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 ASB15Q8WXK1 588 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 NTNG2Q96CW9 530 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 SLC47A1Q96FL8 570 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 SGCZQ96LD1 299 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 ARHGDIGQ99819 225 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 CHID1Q9BWS9 393 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 SH2D2AQ9NP31 389 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 STMN3Q9NZ72 180 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 PRDM4Q9UKN5 801 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 AURKCQ9UQB9 309 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 SLC35A3Q9Y2D2 325 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 KCNMB2Q9Y691 235 aa13.08□□□□□ -0.32
SF3B1-204ENST00000414963 PRAMEF25A6NGN4 478 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 ADAM10O14672 748 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 HPGDP15428 266 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 EVI2BP34910 448 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 RPP38P78345 283 aaKnown RBP13.07□□□□□ -0.32
SF3B1-204ENST00000414963 SNTA1Q13424 505 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 DEFB109BQ30KR1 87 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 GLIPR1L2Q4G1C9 344 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 MRPL2Q5T653 305 aaKnown RBP13.07□□□□□ -0.32
SF3B1-204ENST00000414963 AGAP7PQ5VUJ5 663 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 BROXQ5VW32 411 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 HMGN2P46Q86SG4 172 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 TMEM156Q8N614 296 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 FAM71CQ8NEG0 241 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 OR10G3Q8NGC4 313 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 GRHL3Q8TE85 626 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 AGAP4Q96P64 663 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 NODALQ96S42 347 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 SEPHS2Q99611 448 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 RNF32Q9H0A6 362 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 DCLRE1BQ9H816 532 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 YY1AP1Q9H869 796 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 HHATLQ9HCP6 504 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 KLHL28Q9NXS3 571 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 ABI3Q9P2A4 366 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 SLC9A8Q9Y2E8 581 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 SH3GLB1Q9Y371 365 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 CHCHD2Q9Y6H1 151 aaPredicted RBP13.07□□□□□ -0.32
SF3B1-204ENST00000414963 V9GYQ6 96 aa13.07□□□□□ -0.32
SF3B1-204ENST00000414963 A0A087WV48 116 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 MED19A0JLT2 244 aaPredicted RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 ANKRD33BA6NCL7 494 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 CLDN24A6NM45 220 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 H3BNH8 94 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 K7ENP7 123 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 HNRNPRO43390 633 aaKnown RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 DPM1O60762 260 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 KRT36O76013 467 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 CLK3P49761 638 aaKnown RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 GAS1P54826 345 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 UCNP55089 124 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 PLAURQ03405 335 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 TBCELQ5QJ74 424 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF468Q5VIY5 522 aaPredicted RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 INO80CQ6PI98 192 aaPredicted RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 ISLR2Q6UXK2 745 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 IL20RBQ6UXL0 311 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 RTL4Q6ZR62 310 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 TSEN54Q7Z6J9 526 aaKnown RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 CARM1Q86X55 608 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 MISPQ8IVT2 679 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF440Q8IYI8 595 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 BEST3Q8N1M1 668 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 PAQR8Q8TEZ7 354 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 SNRNP27Q8WVK2 155 aaKnown RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 FRMD6Q96NE9 622 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 TBL1XR1Q9BZK7 514 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms