RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 FAM60AQ9NP50 221 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 PALMDQ9NP74 551 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 TMEM9BQ9NQ34 198 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 TIGARQ9NQ88 270 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 GDF3Q9NR23 364 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 ABCB8Q9NUT2 735 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 SUCLA2Q9P2R7 463 aaPredicted RBP-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 LHX3Q9UBR4 397 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 ZHX1Q9UKY1 873 aaPredicted RBP-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 NIP7Q9Y221 180 aaKnown RBP eCLIP-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 L3MBTL1Q9Y468 752 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 LRRFIP2Q9Y608 721 aaKnown RBP-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 FANCMQ8IYD8 2048 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 PLXNB3Q9ULL4 1909 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 PHLPP1O60346 1717 aa-1.41□□□□□ -2.64
RNU6-540P-201ENST00000384622 PCF11O94913 1555 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 BICRAQ9NZM4 1560 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 PLXND1Q9Y4D7 1925 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 NUP98P52948 1817 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 RTL1A6NKG5 1358 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 IGKV3-7A0A075B6H7 116 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 IGLV3-9A0A075B6K5 115 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 TRBV5-5A0A0J9YX44 114 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 FAM237AA0A1B0GTK4 181 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 FAM236AA0A1B0GUQ0 79 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 FAM236BA0A1B0GV22 79 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 A0A1W2PRG0 241 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 GTPBP10A4D1E9 387 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 H0YGG7 62 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CASC3O15234 703 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 MRPS12O15235 138 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 SYNGR2O43760 224 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CYTIPO60759 359 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 TBX10O75333 385 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 ZNF189O75820 626 aaPredicted RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 LCA5LO95447 670 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CTSGP08311 255 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 NUDT17P0C025 328 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 HOXD10P28358 340 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 OTX1P32242 354 aaPredicted RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CDAP32320 146 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 SHMT2P34897 504 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 NUP62P37198 522 aaPredicted RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 RFC3P40938 356 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 EFNB1P98172 346 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 BAATQ14032 418 aaPredicted RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 EFR3AQ14156 821 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 FGFBP1Q14512 234 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 IYDQ6PHW0 289 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CCDC80Q76M96 950 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 TPH2Q8IWU9 490 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 UBALD2Q8IYN6 164 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 MIR7-3HGQ8N6C7 128 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 SYNPRQ8TBG9 265 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 PLPPR1Q8TBJ4 325 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 RNASE8Q8TDE3 154 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 ARHGEF2Q92974 986 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CARD6Q9BX69 1037 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 DPH3P1Q9H4G8 78 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 STN1Q9H668 368 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 EGLN3Q9H6Z9 239 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 TDRD3Q9H7E2 651 aaKnown RBP-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 TLE6Q9H808 572 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 SIGLEC8Q9NYZ4 499 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CD300AQ9UGN4 299 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 RNF6Q9Y252 685 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 ATP6V0A2Q9Y487 856 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 PCDHGA5Q9Y5G8 931 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 PCDHGA1Q9Y5H4 931 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 LYVE1Q9Y5Y7 322 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 ADAMTSL1Q8N6G6 1762 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 PAPPA2Q9BXP8 1791 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 CTTNBP2Q8WZ74 1663 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 ACEP12821 1306 aa-1.42□□□□□ -2.64
RNU6-540P-201ENST00000384622 MPDZO75970 2070 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 TNS1Q9HBL0 1735 aaKnown RBP-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 IGHV5-10-1A0A0J9YXX1 117 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 PLEKHD1A6NEE1 506 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 RBFOX3A6NFN3 312 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 YDJCA8MPS7 323 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 HIDE1A8MVS5 230 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 ANHXE9PGG2 379 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 RTCAO00442 366 aaKnown RBP-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 SCAMP1O15126 338 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 PMM2O15305 246 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 HTATSF1O43719 755 aaKnown RBP-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 PLA2G6O60733 806 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 KINO60870 393 aaKnown RBP-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 ZBED1O96006 694 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 C1QBP02746 253 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 DNTTP04053 509 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 ZFYP08048 801 aaPredicted RBP-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 SBK2P0C263 348 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 IL7RP16871 459 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 USF1P22415 310 aaPredicted RBP-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 NMBRP28336 390 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 UGT1A3P35503 534 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 CD79BP40259 229 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 AKR1C3P42330 323 aa-1.43□□□□□ -2.64
RNU6-540P-201ENST00000384622 SLC1A6P48664 564 aa-1.43□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms