RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 NUBPLQ8TB37 319 aa24.71■■□□□ 1.55
MSX1-201ENST00000382723 PHF10Q8WUB8 498 aaKnown RBP24.71■■□□□ 1.55
MSX1-201ENST00000382723 TP53INP1Q96A56 240 aa24.71■■□□□ 1.55
MSX1-201ENST00000382723 B3GNT4Q9C0J1 378 aa24.71■■□□□ 1.55
MSX1-201ENST00000382723 ST6GALNAC1Q9NSC7 600 aaPredicted RBP24.71■■□□□ 1.55
MSX1-201ENST00000382723 DLL3Q9NYJ7 618 aa24.71■■□□□ 1.55
MSX1-201ENST00000382723 KCND3Q9UK17 655 aa24.71■■□□□ 1.55
MSX1-201ENST00000382723 NTNG1Q9Y2I2 539 aa24.71■■□□□ 1.55
MSX1-201ENST00000382723 LOC101059948A0A1B0GTJ6 334 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 GFRA3O60609 400 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 ABCB7O75027 752 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 ZFAND5O76080 213 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 CELA2AP08217 269 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 OR5L2Q8NGL0 311 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 OR4C15Q8NGM1 316 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 CNOT9Q92600 299 aaKnown RBP24.7■■□□□ 1.54
MSX1-201ENST00000382723 IMMP1LQ96LU5 166 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 UBQLN4Q9NRR5 601 aa24.7■■□□□ 1.54
MSX1-201ENST00000382723 NSG1A0A0A6YYJ2 146 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 CPSF4LA6NMK7 179 aaKnown RBP24.69■■□□□ 1.54
MSX1-201ENST00000382723 H0YJX3 145 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 AP3D1O14617 1153 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 ALPLP05186 524 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 PRG2P13727 222 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 HPGDP15428 266 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 NRG3P56975 720 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 PLAURQ03405 335 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 SSPNQ14714 243 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 FGD3Q5JSP0 725 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 COLEC12Q5KU26 742 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 C6orf52Q5T4I8 152 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 TAGAPQ8N103 731 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 OR8K3Q8NH51 312 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 ARSGQ96EG1 525 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 PRRC1Q96M27 445 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 MCHR1Q99705 422 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 RBM4BQ9BQ04 359 aaKnown RBP24.69■■□□□ 1.54
MSX1-201ENST00000382723 FNDC11Q9BVV2 318 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 RBM4Q9BWF3 364 aaKnown RBP24.69■■□□□ 1.54
MSX1-201ENST00000382723 OSBPL10Q9BXB5 764 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 DEFB126Q9BYW3 111 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 ZNF160Q9HCG1 818 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 ACAD8Q9UKU7 415 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 KNTC1P50748 2209 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 TMEM200CA6NKL6 621 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 C21orf140B9A014 251 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 HS6ST1O60243 411 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 TSPAN2O60636 221 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 ICOSLGO75144 302 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 H1F0P07305 194 aaKnown RBP24.69■■□□□ 1.54
MSX1-201ENST00000382723 CYP4B1P13584 511 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 TAS2R41P59536 307 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 FGFBP1Q14512 234 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 EXT1Q16394 746 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 NDUFAF7Q7L592 441 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 ELP5Q8TE02 316 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 NRBF2Q96F24 287 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 GPR87Q9BY21 358 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 HOXD1Q9GZZ0 328 aa24.69■■□□□ 1.54
MSX1-201ENST00000382723 DLGAP1O14490 977 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 ACADSP16219 412 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 HSPA13P48723 471 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 ZNF136P52737 540 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 PPP2R2BQ00005 443 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 TMPRSS7Q7RTY8 843 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 GATSQ8NAP1 163 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 ZNF527Q8NB42 609 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 ALPK1Q96QP1 1244 aa24.68■■□□□ 1.54
MSX1-201ENST00000382723 ZBTB20Q9HC78 741 aaPredicted RBP24.68■■□□□ 1.54
MSX1-201ENST00000382723 MRPS18BQ9Y676 258 aaKnown RBP24.68■■□□□ 1.54
MSX1-201ENST00000382723 SERINC4A6NH21 518 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 MASP2O00187 686 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 SCDO00767 359 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 OXSR1O95747 527 aaPredicted RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 KLHL26Q53HC5 615 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 ENTPD8Q5MY95 495 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 PLAG1Q6DJT9 500 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 GIPC3Q8TF64 312 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 GABARAPL1Q9H0R8 117 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 DNAJB12Q9NXW2 375 aaKnown RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 SMPD3Q9NY59 655 aaPredicted RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 NPFFR2Q9Y5X5 522 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 AP4B1Q9Y6B7 739 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 TRBV4-1A0A0J9YWV2 114 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 TERTO14746 1132 aaKnown RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 ZNF354AO60765 605 aaPredicted RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 CYP7B1O75881 506 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 UBTFL6P0CB48 400 aaPredicted RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 UQCRBP14927 111 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 LIMS1P48059 325 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 HMGA2P52926 109 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 MICAQ29983 383 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 NDUFAF6Q330K2 333 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 ZIK1Q3SY52 487 aaPredicted RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 PLEKHM3Q6ZWE6 761 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 RANBP3LQ86VV4 465 aaPredicted RBP24.67■■□□□ 1.54
MSX1-201ENST00000382723 ATG16L2Q8NAA4 619 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 KIF17Q9P2E2 1029 aa24.67■■□□□ 1.54
MSX1-201ENST00000382723 SNAP29O95721 258 aa24.66■■□□□ 1.54
MSX1-201ENST00000382723 HPRP00739 348 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms