RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 LRRN3E7EW58 273 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 FRS3O43559 492 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 DDNO94850 711 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 ADRB1P08588 477 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 ATF1P18846 271 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 GDNFP39905 211 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 RPL35P42766 123 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 SPINT3P49223 89 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 CCR8P51685 355 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 MANFP55145 182 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 BDH1Q02338 343 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 TSPAN31Q12999 210 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 TSTA3Q13630 321 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 KCNA10Q16322 511 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 CEACAM19Q7Z692 300 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 LRRTM4Q86VH4 590 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SLITRK4Q8IW52 837 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 ZNF454Q8N9F8 522 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SLAIN1Q8ND83 568 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 OR13C5Q8NGS8 318 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 ZNF480Q8WV37 535 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 HMGB4Q8WW32 186 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 KLK6Q92876 244 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 AHCYL2Q96HN2 611 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 SMAD5Q99717 465 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 C7orf50Q9BRJ6 194 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS39-202ENST00000348544 OR51I1Q9H343 314 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 LRRN3Q9H3W5 708 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 NANSQ9NR45 359 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 EMC3Q9P0I2 261 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SCN10AQ9Y5Y9 1956 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 A0A1B0GUH1 482 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 RTCAO00442 366 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 ARPC1BO15143 372 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 TSPAN6O43657 245 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 GSTZ1O43708 216 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 SIX6O95475 246 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 TBX6O95947 436 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 GIPP09681 153 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 HOXB1P14653 301 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 GABRA1P14867 456 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 PDHA2P29803 388 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 ATP6V1E1P36543 226 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 OMPP47874 163 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 CCR9P51686 369 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 CTSCP53634 463 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 MAZP56270 477 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 STXBP1P61764 594 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 RIPPLY1Q0D2K3 151 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 DYRK1AQ13627 763 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 GNA13Q14344 377 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 RTP2Q5QGT7 225 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SLC22A10Q63ZE4 541 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 GLB1LQ6UWU2 654 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 PXKQ7Z7A4 578 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SLC9B2Q86UD5 537 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 CPOQ8IVL8 374 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 LINC00471Q8N535 108 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SPICQ8N5J4 248 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 EIF4E3Q8N5X7 224 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 FAM98AQ8NCA5 519 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 FAM71CQ8NEG0 241 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 GNPDA2Q8TDQ7 276 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SMIM4Q8WVI0 70 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 BRI3BPQ8WY22 251 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 OR5P2Q8WZ92 322 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SMPDL3AQ92484 453 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 UPF1Q92900 1129 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS39-202ENST00000348544 WDR34Q96EX3 536 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 C12orf57Q99622 126 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 SLC38A3Q99624 504 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 ALG8Q9BVK2 526 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 KLF16Q9BXK1 252 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 TMPRSS13Q9BYE2 586 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 QRSL1Q9H0R6 528 aaKnown RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 MED20Q9H944 212 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 ZNF304Q9HCX3 659 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 HRASLSQ9HDD0 168 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 HMX1Q9NP08 348 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 KLHL1Q9NR64 748 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 ZNF275Q9NSD4 429 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 TEX10Q9NXF1 929 aaPredicted RBP6.34□□□□□ -1.39
VPS39-202ENST00000348544 HCSTQ9UBK5 93 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 PRKAG2Q9UGJ0 569 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 CLEC4EQ9ULY5 219 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 RCE1Q9Y256 329 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 BACE2Q9Y5Z0 518 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 TP53BP1Q12888 1972 aaPredicted RBP6.34□□□□□ -1.4
VPS39-202ENST00000348544 ARPC5O15511 151 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ADAM12O43184 909 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 BNIP3LO60238 219 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 SC5DO75845 299 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 KDM4BO94953 1096 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 OR2A4O95047 310 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 CATP04040 527 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 CHRM4P08173 479 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 C1GALT1C1LP0DN25 315 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PTNP21246 168 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 MAOBP27338 520 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms