RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 DEFA5Q01523 94 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 TFF2Q03403 129 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 PRDX1Q06830 199 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 MZT2AQ6P582 158 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 METAP1DQ6UB28 335 aaPredicted RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 ZNF784Q8NCA9 323 aaPredicted RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 FANK1Q8TC84 345 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 ZNF431Q8TF32 576 aaPredicted RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 SLC17A9Q9BYT1 436 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 TMEM27Q9HBJ8 222 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 ADAM30Q9UKF2 790 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 C11orf98E9PRG8 122 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 H7C1C5 153 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 RNGTTO60942 597 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 PLGP00747 810 aaPredicted RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 GJA4P35212 333 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 LCN6P62502 163 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 FABP5Q01469 135 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 PRSS41Q7RTY9 318 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 COMTD1Q86VU5 262 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 YIPF7Q8N8F6 280 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 OR7G1Q8NGA0 311 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 SPPL3Q8TCT6 385 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 RASSF5Q8WWW0 418 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 BARHL1Q9BZE3 327 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 MKL2Q9ULH7 1088 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 BAIAP2Q9UQB8 552 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 RASD1Q9Y272 281 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 PCDHGB1Q9Y5G3 927 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 TRIOO75962 3097 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 CNOT1A5YKK6 2376 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 ZNF236Q9UL36 1845 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 IGLV3-16A0A075B6K0 115 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 GTPBP1O00178 669 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 B3GALT2O43825 422 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 GATBO75879 557 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 ITGB7P26010 798 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 RUNX3Q13761 415 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 PXDC1Q5TGL8 231 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 LNX2Q8N448 690 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 OR2T33Q8NG76 320 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 OR4K14Q8NGD5 310 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 RFKQ969G6 155 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 RAD9AQ99638 391 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 BCL7BQ9BQE9 202 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 A0A0G2JMP0 313 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 A0A0X1KG70 313 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 ZAR1LA6NP61 321 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 OPN1LWP04000 364 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 HLA-DPB1P04440 258 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 SNRPBP14678 240 aaKnown RBP11.17□□□□□ -0.62
USP1-201ENST00000339950 MVDP53602 400 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 BNC1Q01954 994 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 KIAA1211LQ6NV74 962 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 OR4M2Q8NGB6 313 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 SMARCD2Q92925 531 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 EFHD2Q96C19 240 aaPredicted RBP11.17□□□□□ -0.62
USP1-201ENST00000339950 PEX11GQ96HA9 241 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 GABARAPL1Q9H0R8 117 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 EIF3FO00303 357 aaPredicted RBP11.17□□□□□ -0.62
USP1-201ENST00000339950 SDC3O75056 442 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 RDH16O75452 317 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 PLATP00750 562 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 BSGP35613 385 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 OR12D2P58182 307 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 CDKL4Q5MAI5 379 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 MSANTD1Q6ZTZ1 278 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 CHCHD4Q8N4Q1 142 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 ZNF563Q8TA94 476 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 VWA8A3KMH1 1905 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 USP34Q70CQ2 3546 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 NPC1O15118 1278 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 KLF8O95600 359 aaPredicted RBP11.17□□□□□ -0.62
USP1-201ENST00000339950 TIMP1P01033 207 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 EDNRAP25101 427 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 TRHRP34981 398 aaPredicted RBP11.17□□□□□ -0.62
USP1-201ENST00000339950 HNRNPFP52597 415 aaKnown RBP11.17□□□□□ -0.62
USP1-201ENST00000339950 MAZP56270 477 aaKnown RBP11.17□□□□□ -0.62
USP1-201ENST00000339950 GNA13Q14344 377 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 ZNF77Q15935 545 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 FAM205BPQ63HN1 556 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 MEIOBQ8N635 442 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 OR5K2Q8NHB8 316 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 NEURL3Q96EH8 262 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 ALG8Q9BVK2 526 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 HOXD1Q9GZZ0 328 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 OR52D1Q9H346 318 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 SAGE1Q9NXZ1 904 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 NCKAP1Q9Y2A7 1128 aa11.17□□□□□ -0.62
USP1-201ENST00000339950 SH3D21A4FU49 640 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 TVP23AA6NH52 213 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 EMC8O43402 210 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 PRKACAP17612 351 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 ATP5A1P25705 553 aaKnown RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 PRKCDQ05655 676 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 BIKQ13323 160 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 MAB21L1Q13394 359 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 POU4F3Q15319 338 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 OR5M10Q6IEU7 315 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 RANBP3LQ86VV4 465 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms