RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CREB3L4Q8TEY5 395 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 JSRP1Q96MG2 331 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 DDX28Q9NUL7 540 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 TPST2O60704 377 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SNAP29O95721 258 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 TCN2P20062 427 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 COL9A1P20849 921 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PRKACGP22612 351 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 IL12AP29459 219 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CASP6P55212 293 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 C21orf58P58505 322 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 GABARAPL2P60520 117 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SPHARQ15513 63 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 FAM111BQ6SJ93 734 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 DLEU7Q6UYE1 221 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 METTL27Q8N6F8 245 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PROKR2Q8NFJ6 384 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ENKURQ8TC29 256 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 BORCS5Q969J3 196 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 DUS3LQ96G46 650 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 MGLLQ99685 303 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 EDEM2Q9BV94 578 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PARPBPQ9NWS1 579 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ASB1Q9Y576 335 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CACNA1DQ01668 2161 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 AGAP5A6NIR3 686 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 A6NIZ1 184 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PDCD5O14737 125 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 GPRIN2O60269 458 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 NELFEP18615 380 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 S1PR1P21453 382 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ELAVL4P26378 380 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 RAP1BP61224 184 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 RAP1AP62834 184 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 EXOC3L2Q2M3D2 409 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CRTC2Q53ET0 693 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 DNASE2BQ8WZ79 361 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 KCTD7Q96MP8 289 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ERMAPQ96PL5 475 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 TTYH2Q9BSA4 534 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 INPP5KQ9BT40 448 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 GALNT8Q9NY28 637 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CNOT2Q9NZN8 540 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 DKKL1Q9UK85 242 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 MRPS7Q9Y2R9 242 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF670-ZNF695F2Z2N8 137 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ADAM23O75077 832 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CRABP1P29762 137 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 OTX2P32243 289 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 MTNR1AP48039 350 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF84P51523 738 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TRAM1Q15629 374 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 DDI2Q5TDH0 399 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 LRRC69Q6ZNQ3 347 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PJA1Q8NG27 643 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 NETO1Q8TDF5 533 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 LRR1Q96L50 414 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ARHGAP9Q9BRR9 750 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 OR10A5Q9H207 317 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF696Q9H7X3 374 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TCF7L1Q9HCS4 588 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PLEKHM1Q9Y4G2 1056 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 A0A1W2PRQ8 180 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF28P17035 718 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CTBP2P56545 445 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CSNK2A1P68400 391 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TIGD6Q17RP2 521 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TUBA3EQ6PEY2 450 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF613Q6PF04 617 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ADGRF3Q8IZF5 1079 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 GOT1L1Q8NHS2 421 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 NT5CQ8TCD5 201 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 MAL2Q969L2 176 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CNRIP1Q96F85 164 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SECISBP2Q96T21 854 aaKnown RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 LRRN3Q9H3W5 708 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 C11orf16Q9NQ32 467 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 NKX1-2Q9UD57 310 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CAB39Q9Y376 341 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PI4KAP42356 2102 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SERINC4A6NH21 518 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 DSCR3O14972 297 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SDC2P34741 201 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PNLIPRP2P54317 469 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 MAP4K2Q12851 820 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PDE7AQ13946 482 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 KEAP1Q14145 624 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 FAM205BPQ63HN1 556 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 BICRALQ6AI39 1079 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ASB18Q6ZVZ8 466 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SHFQ7M4L6 423 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 KRT77Q7Z794 578 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PEG10Q86TG7 708 aaKnown RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 FAM160A2Q8N612 972 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 MORN4Q8NDC4 146 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ANKK1Q8NFD2 765 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 OR2T11Q8NH01 316 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TFAP2CQ92754 450 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CCDC74AQ96AQ1 378 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms