RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 STACQ99469 402 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 NEU1Q99519 415 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SLC30A3Q99726 388 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 TUBA1CQ9BQE3 449 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZSWIM1Q9BR11 485 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MECRQ9BV79 373 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 GON7Q9BXV9 100 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MAGT1Q9H0U3 335 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SRMSQ9H3Y6 488 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RIBC2Q9H4K1 309 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 C1orf115Q9H7X2 142 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 DDX18Q9NVP1 670 aaKnown RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PARPBPQ9NWS1 579 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PCSK1NQ9UHG2 260 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RWDD2AQ9UIY3 292 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SLC7A7Q9UM01 511 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 R3HCC1Q9Y3T6 440 aaKnown RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CADP27708 2225 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MEIKINA0A087WXM9 373 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM129A0AVI4 362 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC169A6NNP5 214 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 E7EQL1 145 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 G3V4G9 280 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 WWP2O00308 870 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 KPNA3O00505 521 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 DOK2O60496 412 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RNF8O76064 485 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 EML2O95834 649 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 IGLV1-40P01703 118 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PCCBP05166 539 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PGA4P0DJD7 388 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PGA3P0DJD8 388 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 IRF2P14316 349 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CREB1P16220 341 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 LMO1P25800 156 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CD40P25942 277 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PSMB6P28072 239 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 NOS3P29474 1203 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 STK19P49842 368 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 WNT3AP56704 352 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 STXBP1P61764 594 aaKnown RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ATP11AP98196 1134 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 IRF8Q02556 426 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 IKZF1Q13422 519 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 GALEQ14376 348 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 GPR19Q15760 415 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 GABRA6Q16445 453 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CA9Q16790 459 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 TCERG1LQ5VWI1 586 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RAP1GAP2Q684P5 730 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 KRTAP5-1Q6L8H4 278 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 HDDC2Q7Z4H3 204 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SPATA21Q7Z572 469 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 LINC00523Q86TU6 105 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 VPS36Q86VN1 386 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 TRIM48Q8IWZ4 208 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CYP4Z2PQ8N1L4 340 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PGBD5Q8N414 524 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 NKAIN3Q8N8D7 197 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 OR2M3Q8NG83 312 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SFXN5Q8TD22 340 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 KAT5Q92993 513 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SLC35C1Q96A29 364 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 C1GALT1C1Q96EU7 318 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM84AQ96KN4 292 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM68Q96MH6 324 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 QKIQ96PU8 341 aaKnown RBP eCLIP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RAB3IPQ96QF0 476 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 BTBD2Q9BX70 525 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MEAF6Q9HAF1 191 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 BRF2Q9HAW0 419 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SIRT3Q9NTG7 399 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MAN2C1Q9NTJ4 1040 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 DEPPQ9NTK1 212 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 HRASLS2Q9NWW9 162 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 BABAM2Q9NXR7 383 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 TUBA8Q9NY65 449 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RASL12Q9NYN1 266 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RUVBL1Q9Y265 456 aaKnown RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MYRFQ9Y2G1 1151 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CEP83Q9Y592 693 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SPIN1Q9Y657 262 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 BZW2Q9Y6E2 419 aaKnown RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAT4Q6V0I7 4981 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ABCA7Q8IZY2 2146 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PLXNB1O43157 2135 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ICE1Q9Y2F5 2266 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 GOLGA6CA6NDK9 693 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GOLGA6BA6NDN3 693 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 A6NDX4 124 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TRIM64A6NGJ6 449 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TRIM64BA6NI03 449 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TMCO5BA8MYB1 307 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 NPIPB9F8W1W9 429 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 H3BUI4 141 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 I6L893 689 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 IFRD1O00458 451 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PLPP1O14494 284 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ENSAO43768 121 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 EIF1BO60739 113 aaKnown RBP1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms