RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 KCNE3Q9Y6H6 103 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 OTOGQ6ZRI0 2925 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 IGLV3-32A0A0A0MS00 114 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 OR2M5A3KFT3 312 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 ALG1L2C9J202 215 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 H0YC42 278 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 H3BML4 177 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 SNUPNO95149 360 aaKnown RBP14.74□□□□□ -0.05
LSM1-201ENST00000311351 NGFRP08138 427 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 TMIGD3P0DMS9 266 aaPredicted RBP14.74□□□□□ -0.05
LSM1-201ENST00000311351 UQCRC1P31930 480 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 ASCL1P50553 236 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 TPD52P55327 224 aaPredicted RBP14.74□□□□□ -0.05
LSM1-201ENST00000311351 RPS26P62854 115 aaKnown RBP14.74□□□□□ -0.05
LSM1-201ENST00000311351 C17orf67Q0P5P2 114 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 FOXF2Q12947 444 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 MYBPHQ13203 477 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 LCE2DQ5TA82 110 aaPredicted RBP14.74□□□□□ -0.05
LSM1-201ENST00000311351 ARSKQ6UWY0 536 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 GCNT2Q8N0V5 402 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 NATD1Q8N6N6 113 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 STACQ99469 402 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 KLHDC3Q9BQ90 382 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 BTBD2Q9BX70 525 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 ACTRT3Q9BYD9 372 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 DPY30Q9C005 99 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 PIGUQ9H490 435 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 SERHL2Q9H4I8 314 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 DUSP22Q9NRW4 184 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 GIN1Q9NXP7 522 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 VDAC3Q9Y277 283 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 L3MBTL1Q9Y468 752 aa14.74□□□□□ -0.05
LSM1-201ENST00000311351 SPG11Q96JI7 2443 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 EEF1E1-BLOC1S5C9J1V9 151 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 SDHDO14521 159 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 ANKRD28O15084 1053 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 SEC14L5O43304 696 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 EEF1E1O43324 174 aaKnown RBP14.73□□□□□ -0.05
LSM1-201ENST00000311351 HCRTR2O43614 444 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 NDUFB5O43674 189 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 ALDOCP09972 364 aaKnown RBP14.73□□□□□ -0.05
LSM1-201ENST00000311351 LBPP18428 481 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 TBXA2RP21731 343 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 CTSSP25774 331 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 CD226Q15762 336 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 DCST2Q5T1A1 773 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 ANKRD46Q86W74 232 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 GRAMD2AQ8IUY3 354 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 KIRREL3Q8IZU9 778 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 OR5D16Q8NGK9 328 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 ADAMTS15Q8TE58 950 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 SMPDL3BQ92485 455 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 MS4A3Q96HJ5 214 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 SH3YL1Q96HL8 342 aaPredicted RBP14.73□□□□□ -0.05
LSM1-201ENST00000311351 OR7D2Q96RA2 312 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 NPAS1Q99742 590 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 MCCC2Q9HCC0 563 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 ZNF629Q9UEG4 869 aaPredicted RBP14.73□□□□□ -0.05
LSM1-201ENST00000311351 FAF1Q9UNN5 650 aaPredicted RBP14.73□□□□□ -0.05
LSM1-201ENST00000311351 ZNF337Q9Y3M9 751 aa14.73□□□□□ -0.05
LSM1-201ENST00000311351 RNF103-CHMP3A0A140T963 221 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 C9JVG2 144 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 SNNO75324 88 aaPredicted RBP14.72□□□□□ -0.05
LSM1-201ENST00000311351 TGM6O95932 706 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 KITP10721 976 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 PEPDP12955 493 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 SUCLG1P53597 346 aaKnown RBP14.72□□□□□ -0.05
LSM1-201ENST00000311351 NME5P56597 212 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 CLDN15P56746 228 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 CLDN20P56880 219 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 PHC1P78364 1004 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 CASP8Q14790 479 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 OR4A15Q8NGL6 344 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 WNT2BQ93097 391 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 MOAP1Q96BY2 351 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 INTS12Q96CB8 462 aaKnown RBP14.72□□□□□ -0.05
LSM1-201ENST00000311351 ZNF559Q9BR84 538 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 WDR55Q9H6Y2 383 aaPredicted RBP14.72□□□□□ -0.05
LSM1-201ENST00000311351 UBQLN4Q9NRR5 601 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 NKIRAS1Q9NYS0 192 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 KCNN3Q9UGI6 736 aa14.72□□□□□ -0.05
LSM1-201ENST00000311351 AKAP6Q13023 2319 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 GOLGA8QA0A0J9YX86 632 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 GOLGA8OA6NCC3 632 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 GOLGA8NF8WBI6 632 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 RNASET2O00584 256 aaKnown RBP14.71□□□□□ -0.05
LSM1-201ENST00000311351 SCDO00767 359 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 OIP5O43482 229 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 SCN2BO60939 215 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 KRT16P08779 473 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 HPGDP15428 266 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 ATP6V1C1P21283 382 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 EPHA3P29320 983 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 LCN1P31025 176 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 CASP9P55211 416 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 BCL2A1Q16548 175 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 TMEM44Q2T9K0 475 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 FBXL19-AS1Q494R0 122 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 SPANXN4Q5MJ08 99 aa14.71□□□□□ -0.05
LSM1-201ENST00000311351 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms