RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 CHST10O43529 356 aa22.25■■□□□ 1.15
TRIM54-201ENST00000296098 FMO6PO60774 539 aa22.25■■□□□ 1.15
TRIM54-201ENST00000296098 CBX7O95931 251 aa22.25■■□□□ 1.15
TRIM54-201ENST00000296098 RNF144AP50876 292 aaPredicted RBP22.25■■□□□ 1.15
TRIM54-201ENST00000296098 AVL9Q8NBF6 648 aa22.25■■□□□ 1.15
TRIM54-201ENST00000296098 OR52R1Q8NGF1 315 aa22.25■■□□□ 1.15
TRIM54-201ENST00000296098 KCNS3Q9BQ31 491 aa22.25■■□□□ 1.15
TRIM54-201ENST00000296098 SPIN1Q9Y657 262 aaPredicted RBP22.25■■□□□ 1.15
TRIM54-201ENST00000296098 BOLA2-SMG1P6H3BVE0 249 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 TBX1O43435 398 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 NKX2-2O95096 273 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 TSPAN19P0C672 248 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 ETV6P41212 452 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 GCGRP47871 477 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 MAZP56270 477 aaKnown RBP22.24■■□□□ 1.15
TRIM54-201ENST00000296098 OR2G6Q5TZ20 316 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 AADACL4Q5VUY2 407 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 DGAT2L6Q6ZPD8 337 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 SHFQ7M4L6 423 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 SLC22A16Q86VW1 577 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 MCATQ8IVS2 390 aaKnown RBP22.24■■□□□ 1.15
TRIM54-201ENST00000296098 FAM160A2Q8N612 972 aaPredicted RBP22.24■■□□□ 1.15
TRIM54-201ENST00000296098 SAMD8Q96LT4 415 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 NELL2Q99435 816 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 RBCK1Q9BYM8 510 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 POLE4Q9NR33 117 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 C2orf42Q9NWW7 574 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 PNMA8CA0A1B0GUJ8 204 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 UNC119BA6NIH7 251 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 HMGN1P05114 100 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 RPS19P39019 145 aaKnown RBP22.24■■□□□ 1.15
TRIM54-201ENST00000296098 FLYWCH1Q4VC44 716 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 WDR88Q6ZMY6 472 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 TSTD1Q8NFU3 115 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 FAM174AQ8TBP5 190 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 RLN3Q8WXF3 142 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 SIAEQ9HAT2 523 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 SMURF1Q9HCE7 757 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 ISYNA1Q9NPH2 558 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 QPCTLQ9NXS2 382 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 IL20RAQ9UHF4 553 aa22.24■■□□□ 1.15
TRIM54-201ENST00000296098 ZNF223Q9UK11 482 aaPredicted RBP22.24■■□□□ 1.15
TRIM54-201ENST00000296098 TDRD6O60522 2096 aaKnown RBP22.23■■□□□ 1.15
TRIM54-201ENST00000296098 TMEM131Q92545 1883 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 SLC9B1P1A6NJY1 282 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 LYPD3O95274 346 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 SPANXN2Q5MJ10 180 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 HSDL2Q6YN16 418 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 LAPTM4BQ86VI4 370 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 RNF113BQ8IZP6 322 aaKnown RBP22.23■■□□□ 1.15
TRIM54-201ENST00000296098 FANK1Q8TC84 345 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 BRIX1Q8TDN6 353 aaKnown RBP22.23■■□□□ 1.15
TRIM54-201ENST00000296098 TMEM239Q8WW34 195 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 HOXB13Q92826 284 aaPredicted RBP22.23■■□□□ 1.15
TRIM54-201ENST00000296098 DPH1Q9BZG8 443 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 CAPN10Q9HC96 672 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 UGT2A1Q9Y4X1 527 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 STK25O00506 426 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 CHRNB1P11230 501 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 BNC1Q01954 994 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 PRTGQ2VWP7 1150 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 STEAP3Q658P3 488 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 CCDC190Q86UF4 302 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 RNF217Q8TC41 542 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 TPSD1Q9BZJ3 242 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 C14orf105Q9NVL8 296 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 HCN3Q9P1Z3 774 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 FBXL21Q9UKT6 434 aa22.23■■□□□ 1.15
TRIM54-201ENST00000296098 A0A0A6YYC8 382 aaPredicted RBP22.22■■□□□ 1.15
TRIM54-201ENST00000296098 I3L1I5 382 aaPredicted RBP22.22■■□□□ 1.15
TRIM54-201ENST00000296098 KCNK2O95069 426 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 LIMS3P0CW19 117 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 LIMS4P0CW20 117 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 CHCHD2P9Q5T1J5 151 aaPredicted RBP22.22■■□□□ 1.15
TRIM54-201ENST00000296098 NXNL2Q5VZ03 156 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 ZAR1Q86SH2 424 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 PFN4Q8NHR9 129 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 TM9SF4Q92544 642 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 CEP19Q96LK0 163 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 BARHL1Q9BZE3 327 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 OR52D1Q9H346 318 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 UBQLN3Q9H347 655 aa22.22■■□□□ 1.15
TRIM54-201ENST00000296098 SOX30O94993 753 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 SRFP11831 508 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 RNH1P13489 461 aaKnown RBP22.21■■□□□ 1.15
TRIM54-201ENST00000296098 RORCP51449 518 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 SKP1P63208 163 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 SLC13A2Q13183 592 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 ZNHIT3Q15649 155 aaPredicted RBP22.21■■□□□ 1.15
TRIM54-201ENST00000296098 TBC1D25Q3MII6 688 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 FAM83FQ8NEG4 500 aaPredicted RBP22.21■■□□□ 1.15
TRIM54-201ENST00000296098 OR52L1Q8NGH7 329 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 GATAD2BQ8WXI9 593 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 UFD1Q92890 307 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 ZNF559Q9BR84 538 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 LMF2Q9BU23 707 aaKnown RBP22.21■■□□□ 1.15
TRIM54-201ENST00000296098 SLC2A4RGQ9NR83 387 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 SNTG1Q9NSN8 517 aa22.21■■□□□ 1.15
TRIM54-201ENST00000296098 TXNL4BQ9NX01 149 aaKnown RBP22.21■■□□□ 1.15
TRIM54-201ENST00000296098 SIDT1Q9NXL6 827 aaKnown RBP22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms