RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 AHCTF1Q8WYP5 2266 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 GXYLT2A0PJZ3 443 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 VSTM2BA6NLU5 285 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 PRICKLE3O43900 615 aaPredicted RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 APOA1P02647 267 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 ATP1B1P05026 303 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 CHRM4P08173 479 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 PMS2P3Q13401 168 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 PRAMEF17Q5VTA0 474 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 PIWIL3Q7Z3Z3 882 aaKnown RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 SLC2A12Q8TD20 617 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 CRELD1Q96HD1 420 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 LMF2Q9BU23 707 aaKnown RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 POLDIP3Q9BY77 421 aaKnown RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 AMBRA1Q9C0C7 1298 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF264O43296 627 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 DBTP11182 482 aaKnown RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 NID1P14543 1247 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 HLCSP50747 726 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 SPEM2Q0P670 501 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 MAP4K2Q12851 820 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 KEAP1Q14145 624 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 PRTGQ2VWP7 1150 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 LAIR1Q6GTX8 287 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 COMMD2Q86X83 199 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 SLC25A45Q8N413 288 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 C16orf52Q8NHV5 167 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF675Q8TD23 568 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 C6orf62Q9GZU0 229 aaPredicted RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 CARD8Q9Y2G2 431 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 TRBV5-3A0A0A0MS03 114 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 IGHV3-20A0A0C4DH32 117 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF726A6NNF4 738 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 HRO43593 1189 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 LGI1O95970 557 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 THBS1P07996 1170 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ZGLP1P0C6A0 271 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 PPICP45877 212 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 SGCBQ16585 318 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 DNM1P34Q6PK57 102 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 PRSS42Q7Z5A4 293 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 GID4Q8IVV7 300 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 TAS2R10Q9NYW0 307 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 GRHPRQ9UBQ7 328 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 GPC6Q9Y625 555 aaPredicted RBP10.76□□□□□ -0.69
VPS4A-201ENST00000254950 TRBV4-1A0A0J9YWV2 114 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 NPIPA5E9PKD4 350 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 FOXD2O60548 495 aaPredicted RBP10.76□□□□□ -0.69
VPS4A-201ENST00000254950 FCMRO60667 390 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF823P16415 610 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 PSPHP78330 225 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 TMED1Q13445 227 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 IL11RAQ14626 422 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 TIGD6Q17RP2 521 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ZBED5Q49AG3 693 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 D2HGDHQ8N465 521 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 FAM131CQ96AQ9 280 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 RNFT2Q96EX2 444 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 DPH1Q9BZG8 443 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 NRSN2Q9GZP1 204 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS4A-201ENST00000254950 NPIPA1Q9UND3 350 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 SATB2Q9UPW6 733 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ZFC3H1O60293 1989 aaKnown RBP10.76□□□□□ -0.69
VPS4A-201ENST00000254950 OR2W5A6NFC9 320 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 UTS2O95399 124 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ITGAMP11215 1152 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 MLLT10P55197 1068 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 CLPPQ16740 277 aaPredicted RBP10.76□□□□□ -0.69
VPS4A-201ENST00000254950 WBP2NLQ6ICG8 309 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 DHRS4L2Q6PKH6 230 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 C6orf15Q6UXA7 325 aaPredicted RBP10.76□□□□□ -0.69
VPS4A-201ENST00000254950 MORN4Q8NDC4 146 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 PROKR2Q8NFJ6 384 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.76□□□□□ -0.69
VPS4A-201ENST00000254950 HSPBAP1Q96EW2 488 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 B4GALT7Q9UBV7 327 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 ADAM30Q9UKF2 790 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 BAIAP2Q9UQB8 552 aa10.76□□□□□ -0.69
VPS4A-201ENST00000254950 K7ESF4 209 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 SLC1A7O00341 560 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 SLC30A4O14863 429 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 RNF13O43567 381 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 GIMD1P0DJR0 217 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 ADORA3P0DMS8 318 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 ACP2P11117 423 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 HOXA6P31267 233 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 RGS19P49795 217 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 ST3GAL4Q11206 333 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 PDSS1Q5T2R2 415 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 C8orf82Q6P1X6 216 aaPredicted RBP10.75□□□□□ -0.69
VPS4A-201ENST00000254950 CMIPQ8IY22 773 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 OR2L13Q8N349 312 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 RAB2BQ8WUD1 216 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 TRUB1Q8WWH5 349 aaKnown RBP10.75□□□□□ -0.69
VPS4A-201ENST00000254950 LOXL4Q96JB6 756 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 LRR1Q96L50 414 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 CACNA1IQ9P0X4 2223 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 A0A1W2PRG6 482 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 AKAP8O43823 692 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms