RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 IL10RAQ13651 578 aa12.9□□□□□ -0.34
SIX4-201ENST00000216513 SLC14A2Q15849 920 aa12.9□□□□□ -0.34
SIX4-201ENST00000216513 KCTD18Q6PI47 426 aaPredicted RBP12.9□□□□□ -0.34
SIX4-201ENST00000216513 ZNF572Q7Z3I7 529 aaPredicted RBP12.9□□□□□ -0.34
SIX4-201ENST00000216513 ZNF565Q8N9K5 539 aa12.9□□□□□ -0.34
SIX4-201ENST00000216513 THAP4Q8WY91 577 aa12.9□□□□□ -0.34
SIX4-201ENST00000216513 BORCS5Q969J3 196 aa12.9□□□□□ -0.34
SIX4-201ENST00000216513 USP54Q70EL1 1684 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 C13orf42A0A1B0GVH6 325 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 CD8B2A6NJW9 211 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 PPP6CO00743 305 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 FRS3O43559 492 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 AIFM1O95831 613 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 HRGP04196 525 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 HEXAP06865 529 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 CD8BP10966 210 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 DCDC1P59894 354 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 HOXC5Q00444 222 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 FADDQ13158 208 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 PTRH1Q86Y79 214 aaKnown RBP12.89□□□□□ -0.35
SIX4-201ENST00000216513 VRK3Q8IV63 474 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 TMEM121BQ9BXQ6 578 aaPredicted RBP12.89□□□□□ -0.35
SIX4-201ENST00000216513 ENY2Q9NPA8 101 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 IGSF5Q9NSI5 407 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 CARD8Q9Y2G2 431 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 C5orf67F2Z3F1 127 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 CTSLP07711 333 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 ITIH1P19827 911 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 ROR2Q01974 943 aaKnown RBP12.89□□□□□ -0.35
SIX4-201ENST00000216513 AFMIDQ63HM1 303 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 BEND4Q6ZU67 534 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 VN1R3Q9BXE9 311 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 PITHD1Q9GZP4 211 aaPredicted RBP12.89□□□□□ -0.35
SIX4-201ENST00000216513 POLR2AP24928 1970 aaKnown RBP12.89□□□□□ -0.35
SIX4-201ENST00000216513 LMO7DNF2Z398 122 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 DCAF7P61962 342 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 NANOGP8Q6NSW7 305 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 LHFPL3Q86UP9 236 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 OR5M1Q8NGP8 315 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 NRSN2Q9GZP1 204 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 NANOGQ9H9S0 305 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 GABRR3A8MPY1 467 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 B3GALT4O96024 378 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 RHDQ02161 417 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 MELKQ14680 651 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 OR52E2Q8NGJ4 325 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 OR13J1Q8NGT2 312 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 C3orf49Q96BT1 292 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 A0A0G2JPF8 293 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 SPTY2D1-AS1A0A0U1RR47 76 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 EPOPA6NHQ4 379 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 IDSB3KWA1 339 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 HNRNPCL3B7ZW38 293 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 GALR3O60755 368 aaPredicted RBP12.89□□□□□ -0.35
SIX4-201ENST00000216513 HNRNPCL4P0DMR1 293 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 S100A10P60903 97 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 KCTD9Q7L273 389 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 ZNF554Q86TJ5 538 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 MED18Q9BUE0 208 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 OR10A5Q9H207 317 aa12.89□□□□□ -0.35
SIX4-201ENST00000216513 AKAP11Q9UKA4 1901 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 FAM189A1O60320 539 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 MITFO75030 526 aaPredicted RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 PDGFBP01127 241 aaPredicted RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 ATAD3CQ5T2N8 411 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 ZNF782Q6ZMW2 699 aaPredicted RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 CENPSQ8N2Z9 138 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 LRRC18Q8N456 261 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 ASB9Q96DX5 294 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 DUSP13Q9UII6 198 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 A0A1B0GV50 99 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 GADD45AP24522 165 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 RPS5P46782 204 aaKnown RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 SH3BP2P78314 561 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 LIPKQ5VXJ0 399 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 HBMQ6B0K9 141 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 OR4K13Q8NH42 304 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 PIGQQ9BRB3 760 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 PCDHGB2Q9Y5G2 931 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 MYH7BA7E2Y1 1941 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 UGDHO60701 494 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 PRH1P02810 166 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 ADAM8P78325 824 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 TNFRSF17Q02223 184 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 MFSD13AQ14CX5 517 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 HENMT1Q5T8I9 393 aaKnown RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 YRDCQ86U90 279 aaKnown RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 WFDC8Q8IUA0 241 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 EXD3Q8N9H8 876 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 SPTSSAQ969W0 71 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 UBQLN4Q9NRR5 601 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 MYH15Q9Y2K3 1946 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 HMGN2P05204 90 aaKnown RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 SLC19A1P41440 591 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 Q6ZNB5 142 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 PLEK2Q9NYT0 353 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 DPM1O60762 260 aa12.88□□□□□ -0.35
SIX4-201ENST00000216513 PRKRAO75569 313 aaKnown RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 GLSO94925 669 aaPredicted RBP12.88□□□□□ -0.35
SIX4-201ENST00000216513 PNMTP11086 282 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms