RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 AFDNP55196 1824 aaKnown RBP16.78■□□□□ 0.28
GTF3A-209ENST00000640289 NEURL1BA8MQ27 555 aa16.78■□□□□ 0.28
GTF3A-209ENST00000640289 GTF2E1P29083 439 aaPredicted RBP16.78■□□□□ 0.28
GTF3A-209ENST00000640289 ST5P78524 1137 aa16.78■□□□□ 0.28
GTF3A-209ENST00000640289 RTL5Q5HYW3 569 aaPredicted RBP16.78■□□□□ 0.28
GTF3A-209ENST00000640289 SYNE4Q8N205 404 aa16.78■□□□□ 0.28
GTF3A-209ENST00000640289 SYT17Q9BSW7 474 aa16.78■□□□□ 0.28
GTF3A-209ENST00000640289 CD2APQ9Y5K6 639 aa16.78■□□□□ 0.28
GTF3A-209ENST00000640289 ANKRD36CQ5JPF3 1778 aa16.78■□□□□ 0.28
GTF3A-209ENST00000640289 CCDC191Q8NCU4 936 aa16.77■□□□□ 0.28
GTF3A-209ENST00000640289 LINS1Q8NG48 757 aa16.77■□□□□ 0.28
GTF3A-209ENST00000640289 JARID2Q92833 1246 aaPredicted RBP16.77■□□□□ 0.28
GTF3A-209ENST00000640289 FAM89AQ96GI7 184 aa16.77■□□□□ 0.28
GTF3A-209ENST00000640289 CWC25Q9NXE8 425 aaPredicted RBP16.77■□□□□ 0.28
GTF3A-209ENST00000640289 CACNA1FO60840 1977 aa16.77■□□□□ 0.27
GTF3A-209ENST00000640289 API5Q9BZZ5 524 aaKnown RBP16.76■□□□□ 0.27
GTF3A-209ENST00000640289 SH3TC1Q8TE82 1336 aa16.75■□□□□ 0.27
GTF3A-209ENST00000640289 TRIM27P14373 513 aa16.75■□□□□ 0.27
GTF3A-209ENST00000640289 GCKRQ14397 625 aa16.75■□□□□ 0.27
GTF3A-209ENST00000640289 ZKSCAN2Q63HK3 967 aa16.75■□□□□ 0.27
GTF3A-209ENST00000640289 ARHGAP45Q92619 1136 aa16.75■□□□□ 0.27
GTF3A-209ENST00000640289 BRIP1Q9BX63 1249 aa16.75■□□□□ 0.27
GTF3A-209ENST00000640289 SRCIN1Q9C0H9 1055 aa16.75■□□□□ 0.27
GTF3A-209ENST00000640289 PXDNLA1KZ92 1463 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 A0A0G2JLW4 131 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 IPO8O15397 1037 aaKnown RBP16.74■□□□□ 0.27
GTF3A-209ENST00000640289 HCLS1P14317 486 aaPredicted RBP16.74■□□□□ 0.27
GTF3A-209ENST00000640289 DPEP1P16444 411 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 CHRNA5P30532 468 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 ATF7IPQ6VMQ6 1270 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 C3orf67Q6ZVT6 689 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 ZBTB38Q8NAP3 1195 aaPredicted RBP16.74■□□□□ 0.27
GTF3A-209ENST00000640289 CLUAP1Q96AJ1 413 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 WWC3Q9ULE0 1092 aa16.74■□□□□ 0.27
GTF3A-209ENST00000640289 RNF123Q5XPI4 1314 aa16.73■□□□□ 0.27
GTF3A-209ENST00000640289 ALDH1L1O75891 902 aa16.73■□□□□ 0.27
GTF3A-209ENST00000640289 PCCAP05165 728 aaPredicted RBP16.73■□□□□ 0.27
GTF3A-209ENST00000640289 TGFB2P61812 414 aa16.73■□□□□ 0.27
GTF3A-209ENST00000640289 ABCC4O15439 1325 aa16.72■□□□□ 0.27
GTF3A-209ENST00000640289 PLIN1O60240 522 aa16.72■□□□□ 0.27
GTF3A-209ENST00000640289 PDE6BP35913 854 aa16.72■□□□□ 0.27
GTF3A-209ENST00000640289 SLC10A5Q5PT55 438 aa16.72■□□□□ 0.27
GTF3A-209ENST00000640289 C2CD5Q86YS7 1000 aa16.72■□□□□ 0.27
GTF3A-209ENST00000640289 TNRC6CQ9HCJ0 1690 aaKnown RBP16.72■□□□□ 0.27
GTF3A-209ENST00000640289 KIF13BQ9NQT8 1826 aa16.71■□□□□ 0.27
GTF3A-209ENST00000640289 H7C1W4 665 aa16.71■□□□□ 0.27
GTF3A-209ENST00000640289 IRS4O14654 1257 aaPredicted RBP16.71■□□□□ 0.27
GTF3A-209ENST00000640289 KCNA3P22001 575 aa16.71■□□□□ 0.27
GTF3A-209ENST00000640289 UBE3BQ7Z3V4 1068 aa16.71■□□□□ 0.27
GTF3A-209ENST00000640289 ANKRD31Q8N7Z5 1873 aa16.71■□□□□ 0.27
GTF3A-209ENST00000640289 RIC1Q4ADV7 1423 aa16.7■□□□□ 0.26
GTF3A-209ENST00000640289 KIAA1551Q9HCM1 1747 aa16.7■□□□□ 0.26
GTF3A-209ENST00000640289 KLRG2A4D1S0 409 aaPredicted RBP16.7■□□□□ 0.26
GTF3A-209ENST00000640289 CCT4P50991 539 aaKnown RBP16.7■□□□□ 0.26
GTF3A-209ENST00000640289 CASP7P55210 303 aa16.7■□□□□ 0.26
GTF3A-209ENST00000640289 CDHR2Q9BYE9 1310 aa16.7■□□□□ 0.26
GTF3A-209ENST00000640289 H0YIN7 160 aa16.69■□□□□ 0.26
GTF3A-209ENST00000640289 SRGNP10124 158 aa16.69■□□□□ 0.26
GTF3A-209ENST00000640289 RLBP1P12271 317 aa16.69■□□□□ 0.26
GTF3A-209ENST00000640289 NLRP3Q96P20 1036 aa16.69■□□□□ 0.26
GTF3A-209ENST00000640289 C9orf78Q9NZ63 289 aaPredicted RBP16.69■□□□□ 0.26
GTF3A-209ENST00000640289 GRM8O00222 908 aa16.68■□□□□ 0.26
GTF3A-209ENST00000640289 NBPF7P0C2Y1 421 aaPredicted RBP16.68■□□□□ 0.26
GTF3A-209ENST00000640289 CRY2Q49AN0 593 aa16.68■□□□□ 0.26
GTF3A-209ENST00000640289 INTS3Q68E01 1043 aaKnown RBP16.68■□□□□ 0.26
GTF3A-209ENST00000640289 DZIP1LQ8IYY4 767 aaKnown RBP16.68■□□□□ 0.26
GTF3A-209ENST00000640289 TMEM57Q8N5G2 664 aa16.68■□□□□ 0.26
GTF3A-209ENST00000640289 ZNF622Q969S3 477 aaKnown RBP eCLIP16.68■□□□□ 0.26
GTF3A-209ENST00000640289 N4BP2Q86UW6 1770 aaPredicted RBP16.68■□□□□ 0.26
GTF3A-209ENST00000640289 SRCAPQ6ZRS2 3230 aa16.68■□□□□ 0.26
GTF3A-209ENST00000640289 PDE8AO60658 829 aa16.67■□□□□ 0.26
GTF3A-209ENST00000640289 FTSJ3Q8IY81 847 aaKnown RBP16.67■□□□□ 0.26
GTF3A-209ENST00000640289 PANK1Q8TE04 598 aa16.67■□□□□ 0.26
GTF3A-209ENST00000640289 MASTLQ96GX5 879 aa16.67■□□□□ 0.26
GTF3A-209ENST00000640289 USP44Q9H0E7 712 aa16.67■□□□□ 0.26
GTF3A-209ENST00000640289 COL11A2P13942 1736 aaPredicted RBP16.67■□□□□ 0.26
GTF3A-209ENST00000640289 NPR1P16066 1061 aa16.66■□□□□ 0.26
GTF3A-209ENST00000640289 DDX60Q8IY21 1712 aaKnown RBP16.66■□□□□ 0.26
GTF3A-209ENST00000640289 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
GTF3A-209ENST00000640289 CCDC85AQ96PX6 553 aaPredicted RBP16.66■□□□□ 0.26
GTF3A-209ENST00000640289 PIM2Q9P1W9 311 aa16.66■□□□□ 0.26
GTF3A-209ENST00000640289 PDZRN3Q9UPQ7 1066 aa16.66■□□□□ 0.26
GTF3A-209ENST00000640289 UTYO14607 1347 aa16.66■□□□□ 0.26
GTF3A-209ENST00000640289 SF3B3Q15393 1217 aaKnown RBP16.65■□□□□ 0.26
GTF3A-209ENST00000640289 C20orf194Q5TEA3 1177 aa16.65■□□□□ 0.26
GTF3A-209ENST00000640289 STYK1Q6J9G0 422 aa16.65■□□□□ 0.26
GTF3A-209ENST00000640289 RPGRQ92834 1020 aaKnown RBP16.65■□□□□ 0.26
GTF3A-209ENST00000640289 SUCLG2Q96I99 432 aa16.65■□□□□ 0.26
GTF3A-209ENST00000640289 CTSWP56202 376 aa16.64■□□□□ 0.25
GTF3A-209ENST00000640289 EPHA10Q5JZY3 1008 aa16.64■□□□□ 0.25
GTF3A-209ENST00000640289 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.64■□□□□ 0.25
GTF3A-209ENST00000640289 MEIS3Q99687 375 aa16.64■□□□□ 0.25
GTF3A-209ENST00000640289 PLA2G12BQ9BX93 195 aa16.64■□□□□ 0.25
GTF3A-209ENST00000640289 BCS1LQ9Y276 419 aa16.64■□□□□ 0.25
GTF3A-209ENST00000640289 HSP90B1P14625 803 aaKnown RBP16.63■□□□□ 0.25
GTF3A-209ENST00000640289 YBX3P16989 372 aaKnown RBP eCLIP16.63■□□□□ 0.252e-8■■□□□ 14.4
GTF3A-209ENST00000640289 HOXA10P31260 410 aaPredicted RBP16.63■□□□□ 0.25
GTF3A-209ENST00000640289 RRP1P56182 461 aaKnown RBP16.63■□□□□ 0.25
GTF3A-209ENST00000640289 FOXO4P98177 505 aa16.63■□□□□ 0.25
GTF3A-209ENST00000640289 ITPRIPQ8IWB1 547 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms