RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 LTBP1Q14766 1721 aa19.56■□□□□ 0.72
PNKP-218ENST00000625299 COL4A5P29400 1685 aa19.56■□□□□ 0.72
PNKP-218ENST00000625299 NUP98P52948 1817 aa19.56■□□□□ 0.72
PNKP-218ENST00000625299 TCERG1O14776 1098 aaKnown RBP19.56■□□□□ 0.72
PNKP-218ENST00000625299 ABHD8Q96I13 439 aa19.56■□□□□ 0.72
PNKP-218ENST00000625299 NYXQ9GZU5 481 aa19.56■□□□□ 0.72
PNKP-218ENST00000625299 DDX21Q9NR30 783 aaKnown RBP eCLIP19.56■□□□□ 0.72
PNKP-218ENST00000625299 FMR1Q06787 632 aaKnown RBP eCLIP19.55■□□□□ 0.72
PNKP-218ENST00000625299 LARGE2Q8N3Y3 721 aa19.55■□□□□ 0.72
PNKP-218ENST00000625299 SNED1Q8TER0 1413 aa19.55■□□□□ 0.72
PNKP-218ENST00000625299 GPTP24298 496 aa19.54■□□□□ 0.72
PNKP-218ENST00000625299 TAF7Q15545 349 aaPredicted RBP19.54■□□□□ 0.72
PNKP-218ENST00000625299 CRY2Q49AN0 593 aa19.54■□□□□ 0.72
PNKP-218ENST00000625299 EPS15P42566 896 aa19.53■□□□□ 0.72
PNKP-218ENST00000625299 CC2D2BQ6DHV5 1058 aa19.53■□□□□ 0.72
PNKP-218ENST00000625299 KIF6Q6ZMV9 814 aa19.53■□□□□ 0.72
PNKP-218ENST00000625299 SLC51AQ86UW1 340 aa19.53■□□□□ 0.72
PNKP-218ENST00000625299 CAPNS2Q96L46 248 aa19.53■□□□□ 0.72
PNKP-218ENST00000625299 RRP7AQ9Y3A4 280 aaKnown RBP19.53■□□□□ 0.72
PNKP-218ENST00000625299 SCNN1DP51172 638 aa19.52■□□□□ 0.72
PNKP-218ENST00000625299 FAM161AQ3B820 660 aa19.52■□□□□ 0.72
PNKP-218ENST00000625299 CYP4F22Q6NT55 531 aa19.52■□□□□ 0.72
PNKP-218ENST00000625299 BEGAINQ9BUH8 593 aa19.52■□□□□ 0.72
PNKP-218ENST00000625299 ZBTB3Q9H5J0 574 aa19.52■□□□□ 0.72
PNKP-218ENST00000625299 TRPM7Q96QT4 1865 aa19.52■□□□□ 0.71
PNKP-218ENST00000625299 MAP3K15Q6ZN16 1313 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 TRAF5O00463 557 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 PPEF1O14829 653 aaPredicted RBP19.51■□□□□ 0.71
PNKP-218ENST00000625299 HTATSF1O43719 755 aaKnown RBP19.51■□□□□ 0.71
PNKP-218ENST00000625299 MYL6BP14649 208 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 ECE1P42892 770 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 TTLL7Q6ZT98 887 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 NIM1KQ8IY84 436 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 THSD7BQ9C0I4 1608 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 UBN2Q6ZU65 1347 aa19.51■□□□□ 0.71
PNKP-218ENST00000625299 KDM3BQ7LBC6 1761 aa19.5■□□□□ 0.71
PNKP-218ENST00000625299 ERVV-1B6SEH8 477 aa19.5■□□□□ 0.71
PNKP-218ENST00000625299 PPP2R1AP30153 589 aa19.5■□□□□ 0.71
PNKP-218ENST00000625299 RBM17Q96I25 401 aaKnown RBP19.5■□□□□ 0.71
PNKP-218ENST00000625299 DLG5Q8TDM6 1919 aa19.49■□□□□ 0.71
PNKP-218ENST00000625299 SUSD4Q5VX71 490 aa19.49■□□□□ 0.71
PNKP-218ENST00000625299 USP50Q70EL3 339 aaPredicted RBP19.49■□□□□ 0.71
PNKP-218ENST00000625299 GPR101Q96P66 508 aaPredicted RBP19.49■□□□□ 0.71
PNKP-218ENST00000625299 RIC1Q4ADV7 1423 aa19.49■□□□□ 0.71
PNKP-218ENST00000625299 CCDC85CA6NKD9 419 aa19.48■□□□□ 0.71
PNKP-218ENST00000625299 PPIP5K2O43314 1243 aa19.48■□□□□ 0.71
PNKP-218ENST00000625299 HOXA10P31260 410 aaPredicted RBP19.48■□□□□ 0.71
PNKP-218ENST00000625299 TSKSQ9UJT2 592 aa19.48■□□□□ 0.71
PNKP-218ENST00000625299 NEFMP07197 916 aa19.47■□□□□ 0.71
PNKP-218ENST00000625299 AOC3Q16853 763 aa19.47■□□□□ 0.71
PNKP-218ENST00000625299 GRIPAP1Q4V328 841 aa19.47■□□□□ 0.71
PNKP-218ENST00000625299 C3orf67Q6ZVT6 689 aa19.47■□□□□ 0.71
PNKP-218ENST00000625299 PNISRQ8TF01 805 aaKnown RBP19.47■□□□□ 0.71
PNKP-218ENST00000625299 TMX4Q9H1E5 349 aaPredicted RBP19.47■□□□□ 0.71
PNKP-218ENST00000625299 IBTKQ9P2D0 1353 aaPredicted RBP19.46■□□□□ 0.71
PNKP-218ENST00000625299 AOC2O75106 756 aa19.46■□□□□ 0.71
PNKP-218ENST00000625299 CST9Q5W186 159 aa19.46■□□□□ 0.71
PNKP-218ENST00000625299 CRAMP1Q96RY5 1269 aa19.46■□□□□ 0.71
PNKP-218ENST00000625299 NTSR2O95665 410 aa19.45■□□□□ 0.7
PNKP-218ENST00000625299 EIF4A1P60842 406 aaKnown RBP19.45■□□□□ 0.7
PNKP-218ENST00000625299 TLL2Q9Y6L7 1015 aa19.45■□□□□ 0.7
PNKP-218ENST00000625299 THUMPD2Q9BTF0 503 aaKnown RBP19.44■□□□□ 0.7
PNKP-218ENST00000625299 ADARB2Q9NS39 739 aaKnown RBP19.44■□□□□ 0.7
PNKP-218ENST00000625299 GPRC5DQ9NZD1 345 aa19.44■□□□□ 0.7
PNKP-218ENST00000625299 CELF2O95319 508 aaKnown RBP19.43■□□□□ 0.7
PNKP-218ENST00000625299 PPP1R42Q7Z4L9 355 aa19.43■□□□□ 0.7
PNKP-218ENST00000625299 ZNF34Q8IZ26 560 aa19.43■□□□□ 0.7
PNKP-218ENST00000625299 CFAP44Q96MT7 982 aa19.43■□□□□ 0.7
PNKP-218ENST00000625299 NLRP3Q96P20 1036 aa19.43■□□□□ 0.7
PNKP-218ENST00000625299 GIGYF2Q6Y7W6 1299 aaKnown RBP19.42■□□□□ 0.7
PNKP-218ENST00000625299 GLIS2Q9BZE0 524 aaPredicted RBP19.42■□□□□ 0.7
PNKP-218ENST00000625299 ZNF408Q9H9D4 720 aa19.42■□□□□ 0.7
PNKP-218ENST00000625299 SLC34A2O95436 690 aa19.41■□□□□ 0.7
PNKP-218ENST00000625299 GMPSP49915 693 aaPredicted RBP19.41■□□□□ 0.7
PNKP-218ENST00000625299 MLLT1Q03111 559 aaPredicted RBP19.41■□□□□ 0.7
PNKP-218ENST00000625299 CXCL9Q07325 125 aa19.41■□□□□ 0.7
PNKP-218ENST00000625299 ZNRF3Q9ULT6 936 aa19.41■□□□□ 0.7
PNKP-218ENST00000625299 ATP6V0A2Q9Y487 856 aa19.41■□□□□ 0.7
PNKP-218ENST00000625299 ABCC4O15439 1325 aa19.41■□□□□ 0.7
PNKP-218ENST00000625299 MAP2K2P36507 400 aa19.4■□□□□ 0.7
PNKP-218ENST00000625299 PARP10Q53GL7 1025 aa19.4■□□□□ 0.7
PNKP-218ENST00000625299 DPP8Q6V1X1 898 aaPredicted RBP19.4■□□□□ 0.7
PNKP-218ENST00000625299 SUPT20HQ8NEM7 779 aa19.4■□□□□ 0.7
PNKP-218ENST00000625299 BCL2L13Q9BXK5 485 aa19.4■□□□□ 0.7
PNKP-218ENST00000625299 SAPCD2Q86UD0 394 aa19.39■□□□□ 0.69
PNKP-218ENST00000625299 UTP14AQ9BVJ6 771 aaKnown RBP19.39■□□□□ 0.69
PNKP-218ENST00000625299 CASP8AP2Q9UKL3 1982 aa19.39■□□□□ 0.69
PNKP-218ENST00000625299 RAD17O75943 681 aa19.38■□□□□ 0.69
PNKP-218ENST00000625299 EIF2S2P20042 333 aaKnown RBP19.38■□□□□ 0.69
PNKP-218ENST00000625299 LAMB2P55268 1798 aa19.38■□□□□ 0.69
PNKP-218ENST00000625299 NFE2L2Q16236 605 aa19.38■□□□□ 0.69
PNKP-218ENST00000625299 CIAPIN1Q6FI81 312 aa19.38■□□□□ 0.69
PNKP-218ENST00000625299 ERBB4Q15303 1308 aa19.37■□□□□ 0.69
PNKP-218ENST00000625299 VPS33BQ9H267 617 aa19.37■□□□□ 0.69
PNKP-218ENST00000625299 MAPK8IP3Q9UPT6 1336 aa19.36■□□□□ 0.69
PNKP-218ENST00000625299 ANXA1P04083 346 aa19.36■□□□□ 0.69
PNKP-218ENST00000625299 MPNDQ8N594 471 aa19.36■□□□□ 0.69
PNKP-218ENST00000625299 TRPM4Q8TD43 1214 aa19.36■□□□□ 0.69
PNKP-218ENST00000625299 MCOLN1Q9GZU1 580 aa19.36■□□□□ 0.69
PNKP-218ENST00000625299 TSPYL4Q9UJ04 414 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms