RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ECHDC1Q9NTX5 307 aa17.37■□□□□ 0.37
SHROOM1-208ENST00000617339 NEURL1BA8MQ27 555 aa17.37■□□□□ 0.37
SHROOM1-208ENST00000617339 TFCP2Q12800 502 aa17.37■□□□□ 0.37
SHROOM1-208ENST00000617339 GCKRQ14397 625 aa17.37■□□□□ 0.37
SHROOM1-208ENST00000617339 DDX46Q7L014 1031 aaKnown RBP17.37■□□□□ 0.37
SHROOM1-208ENST00000617339 PI4K2BQ8TCG2 481 aa17.37■□□□□ 0.37
SHROOM1-208ENST00000617339 SYNE4Q8N205 404 aa17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 DCAF5Q96JK2 942 aa17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 JAKMIP1Q96N16 626 aaKnown RBP17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 RAB11FIP3O75154 756 aa17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 NECAB1Q8N987 351 aa17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 NALCNQ8IZF0 1738 aa17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 COL9A3Q14050 684 aaPredicted RBP17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 CCDC129Q6ZRS4 1044 aa17.36■□□□□ 0.37
SHROOM1-208ENST00000617339 TOPAZ1Q8N9V7 1692 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 UBAP1LF5GYI3 381 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 GPATCH3Q96I76 525 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 ZKSCAN5Q9Y2L8 839 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 CBX1P83916 185 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 HSP90AB4PQ58FF6 505 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 SEC62Q99442 399 aaKnown RBP17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 ASAP1Q9ULH1 1129 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 NWD1Q149M9 1564 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 ZNF830Q96NB3 372 aaPredicted RBP17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 LMBRD1Q9NUN5 540 aa17.35■□□□□ 0.37
SHROOM1-208ENST00000617339 GLRX3O76003 335 aaKnown RBP17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 POLA2Q14181 598 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 BABAM1Q9NWV8 329 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 ADCK5Q3MIX3 580 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 HSP90AB3PQ58FF7 597 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 NGLY1Q96IV0 654 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 LRRC2Q9BYS8 371 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 OSBPL3Q9H4L5 887 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 SPATA31A3Q5VYP0 1347 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 RGPD2P0DJD1 1756 aa17.34■□□□□ 0.37
SHROOM1-208ENST00000617339 FAM89AQ96GI7 184 aa17.33■□□□□ 0.37
SHROOM1-208ENST00000617339 NSFL1CQ9UNZ2 370 aaKnown RBP17.33■□□□□ 0.37
SHROOM1-208ENST00000617339 NMIQ13287 307 aaPredicted RBP17.33■□□□□ 0.36
SHROOM1-208ENST00000617339 CCDC83Q8IWF9 413 aa17.33■□□□□ 0.36
SHROOM1-208ENST00000617339 TMOD3Q9NYL9 352 aa17.33■□□□□ 0.36
SHROOM1-208ENST00000617339 KDM4AO75164 1064 aa17.33■□□□□ 0.36
SHROOM1-208ENST00000617339 ZNF445P59923 1031 aa17.33■□□□□ 0.36
SHROOM1-208ENST00000617339 DBNDD2Q9BQY9 259 aa17.33■□□□□ 0.36
SHROOM1-208ENST00000617339 NBPF26B4DH59 902 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 ALDH1L1O75891 902 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 NBPF14Q5TI25 921 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 NBPF10Q6P3W6 841 aaKnown RBP17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 FERMT3Q86UX7 667 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 NBPF15Q8N660 670 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 GPT2Q8TD30 523 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 MEGF6O75095 1541 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 XRN1Q8IZH2 1706 aaKnown RBP17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 ZNF500O60304 480 aaPredicted RBP17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 SASS6Q6UVJ0 657 aa17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 C17orf53Q8N3J3 647 aaPredicted RBP17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 METTL22Q9BUU2 404 aaPredicted RBP17.32■□□□□ 0.36
SHROOM1-208ENST00000617339 VPS37CA5D8V6 355 aaPredicted RBP17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 DYNC1I1O14576 645 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 HOXB7P09629 217 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 KCNQ4P56696 695 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 FKBP4Q02790 459 aaKnown RBP eCLIP17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 TAF6LQ9Y6J9 622 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 IL2RBP14784 551 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 PLCB2Q00722 1185 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 CSPP1Q1MSJ5 1256 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 DNAJC10Q8IXB1 793 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 C8orf37Q96NL8 207 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 TMEM63CQ9P1W3 806 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 TBC1D2BQ9UPU7 963 aa17.31■□□□□ 0.36
SHROOM1-208ENST00000617339 SGSM2O43147 1006 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 BICDL1Q6ZP65 573 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 SNX14Q9Y5W7 946 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 SMAP1Q8IYB5 467 aaPredicted RBP17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 FMN2Q9NZ56 1722 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 SALL3Q9BXA9 1300 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 IGSF3O75054 1194 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 AK2P54819 239 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 NUCB2P80303 420 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 PUS3Q9BZE2 481 aaKnown RBP17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 CCDC39Q9UFE4 941 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 STAP2Q9UGK3 403 aa17.3■□□□□ 0.36
SHROOM1-208ENST00000617339 A0A0D9SFI3 127 aa17.29■□□□□ 0.36
SHROOM1-208ENST00000617339 LMTK3Q96Q04 1460 aa17.29■□□□□ 0.36
SHROOM1-208ENST00000617339 TERF1P54274 439 aa17.29■□□□□ 0.36
SHROOM1-208ENST00000617339 LTN1O94822 1766 aa17.29■□□□□ 0.36
SHROOM1-208ENST00000617339 GOLIM4O00461 696 aa17.29■□□□□ 0.36
SHROOM1-208ENST00000617339 LRRC24Q50LG9 513 aa17.29■□□□□ 0.36
SHROOM1-208ENST00000617339 SMIM5Q71RC9 77 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 STK11IPQ8N1F8 1099 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 EXOC5O00471 708 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 KDM6AO15550 1401 aaPredicted RBP17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 ZDHHC9Q9Y397 364 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 NFAT5O94916 1531 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 LARGE1O95461 756 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 FAM173BQ6P4H8 233 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 CHST3Q7LGC8 479 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 RGPD1P0DJD0 1748 aa17.28■□□□□ 0.36
SHROOM1-208ENST00000617339 FIBPO43427 364 aa17.27■□□□□ 0.36
SHROOM1-208ENST00000617339 RBM8AQ9Y5S9 174 aaKnown RBP17.27■□□□□ 0.36
SHROOM1-208ENST00000617339 ZNF589Q86UQ0 364 aaPredicted RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms