RNA–Protein interactions for RNA: ENST00000616550.4

CBWD3-212, Transcript of COBW domain containing 3, humanhuman

TSL 2 BASIC

Gene CBWD3, Length 721 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-212ENST00000616550 NLRP10Q86W26 655 aa28.58■■■□□ 2.17
CBWD3-212ENST00000616550 ARFGEF2Q9Y6D5 1785 aa28.57■■■□□ 2.16
CBWD3-212ENST00000616550 GOLGA2Q08379 1002 aa28.57■■■□□ 2.16
CBWD3-212ENST00000616550 TWISTNBQ3B726 338 aaPredicted RBP28.57■■■□□ 2.16
CBWD3-212ENST00000616550 CRY2Q49AN0 593 aa28.57■■■□□ 2.16
CBWD3-212ENST00000616550 PHAXQ9H814 394 aaKnown RBP28.57■■■□□ 2.16
CBWD3-212ENST00000616550 LMNB1P20700 586 aa28.56■■■□□ 2.16
CBWD3-212ENST00000616550 RIC1Q4ADV7 1423 aa28.56■■■□□ 2.16
CBWD3-212ENST00000616550 RNF123Q5XPI4 1314 aa28.56■■■□□ 2.16
CBWD3-212ENST00000616550 RIC3Q7Z5B4 369 aa28.56■■■□□ 2.16
CBWD3-212ENST00000616550 RPGRQ92834 1020 aaKnown RBP28.56■■■□□ 2.16
CBWD3-212ENST00000616550 TNRC6CQ9HCJ0 1690 aaKnown RBP28.55■■■□□ 2.16
CBWD3-212ENST00000616550 FANCIQ9NVI1 1328 aa28.55■■■□□ 2.16
CBWD3-212ENST00000616550 SLC10A5Q5PT55 438 aa28.55■■■□□ 2.16
CBWD3-212ENST00000616550 NLRP3Q96P20 1036 aa28.55■■■□□ 2.16
CBWD3-212ENST00000616550 STK31Q9BXU1 1019 aa28.55■■■□□ 2.16
CBWD3-212ENST00000616550 TRMT112Q9UI30 125 aaKnown RBP28.55■■■□□ 2.16
CBWD3-212ENST00000616550 NFKBIEO00221 500 aa28.54■■■□□ 2.16
CBWD3-212ENST00000616550 CCDC88AQ3V6T2 1871 aa28.54■■■□□ 2.16
CBWD3-212ENST00000616550 FER1L6Q2WGJ9 1857 aa28.53■■■□□ 2.16
CBWD3-212ENST00000616550 DDX58O95786 925 aaKnown RBP28.52■■■□□ 2.16
CBWD3-212ENST00000616550 C7orf43Q8WVR3 580 aa28.52■■■□□ 2.16
CBWD3-212ENST00000616550 ISCA1Q9BUE6 129 aa28.52■■■□□ 2.16
CBWD3-212ENST00000616550 ATP5J2-PTCD1G3V325 749 aa28.51■■■□□ 2.15
CBWD3-212ENST00000616550 CCER2I3L3R5 266 aa28.51■■■□□ 2.15
CBWD3-212ENST00000616550 HOXA10P31260 410 aaPredicted RBP28.51■■■□□ 2.15
CBWD3-212ENST00000616550 RBM17Q96I25 401 aaKnown RBP28.51■■■□□ 2.15
CBWD3-212ENST00000616550 TAOK3Q9H2K8 898 aa28.51■■■□□ 2.15
CBWD3-212ENST00000616550 MYH16Q9H6N6 1097 aa28.51■■■□□ 2.15
CBWD3-212ENST00000616550 SH3TC1Q8TE82 1336 aa28.5■■■□□ 2.15
CBWD3-212ENST00000616550 CCDC93Q567U6 631 aa28.5■■■□□ 2.15
CBWD3-212ENST00000616550 TCERG1O14776 1098 aaKnown RBP28.49■■■□□ 2.15
CBWD3-212ENST00000616550 PRELPP51888 382 aa28.49■■■□□ 2.15
CBWD3-212ENST00000616550 ZNF428Q96B54 188 aa28.49■■■□□ 2.15
CBWD3-212ENST00000616550 CRAMP1Q96RY5 1269 aa28.49■■■□□ 2.15
CBWD3-212ENST00000616550 LTBP3Q9NS15 1303 aa28.48■■■□□ 2.15
CBWD3-212ENST00000616550 HCLS1P14317 486 aaPredicted RBP28.48■■■□□ 2.15
CBWD3-212ENST00000616550 TRIM28Q13263 835 aaKnown RBP28.48■■■□□ 2.15
CBWD3-212ENST00000616550 C3orf67Q6ZVT6 689 aa28.48■■■□□ 2.15
CBWD3-212ENST00000616550 SYNE4Q8N205 404 aa28.48■■■□□ 2.15
CBWD3-212ENST00000616550 SPINK5Q9NQ38 1064 aaPredicted RBP28.48■■■□□ 2.15
CBWD3-212ENST00000616550 ZC3H4Q9UPT8 1303 aaKnown RBP28.47■■■□□ 2.15
CBWD3-212ENST00000616550 C1QTNF8P60827 252 aa28.47■■■□□ 2.15
CBWD3-212ENST00000616550 EXOSC9Q06265 439 aaKnown RBP28.47■■■□□ 2.15
CBWD3-212ENST00000616550 RTKN2Q8IZC4 609 aa28.47■■■□□ 2.15
CBWD3-212ENST00000616550 SLC4A2P04920 1241 aa28.46■■■□□ 2.15
CBWD3-212ENST00000616550 MYD88Q99836 296 aa28.46■■■□□ 2.15
CBWD3-212ENST00000616550 KDM2BQ8NHM5 1336 aa28.45■■■□□ 2.15
CBWD3-212ENST00000616550 VAMP4O75379 141 aa28.45■■■□□ 2.14
CBWD3-212ENST00000616550 OLFM4Q6UX06 510 aa28.44■■■□□ 2.14
CBWD3-212ENST00000616550 KSR2Q6VAB6 950 aa28.44■■■□□ 2.14
CBWD3-212ENST00000616550 FAM89AQ96GI7 184 aa28.44■■■□□ 2.14
CBWD3-212ENST00000616550 METTL22Q9BUU2 404 aaPredicted RBP28.44■■■□□ 2.14
CBWD3-212ENST00000616550 CACNA1FO60840 1977 aa28.43■■■□□ 2.14
CBWD3-212ENST00000616550 CC2D2BQ6DHV5 1058 aa28.43■■■□□ 2.14
CBWD3-212ENST00000616550 MAP3K2Q9Y2U5 619 aa28.43■■■□□ 2.14
CBWD3-212ENST00000616550 DICER1Q9UPY3 1922 aaKnown RBP28.43■■■□□ 2.14
CBWD3-212ENST00000616550 FKBP4Q02790 459 aaKnown RBP eCLIP28.42■■■□□ 2.14
CBWD3-212ENST00000616550 CCDC191Q8NCU4 936 aa28.42■■■□□ 2.14
CBWD3-212ENST00000616550 ZNF521Q96K83 1311 aa28.42■■■□□ 2.14
CBWD3-212ENST00000616550 PI4KAP2A4QPH2 592 aa28.41■■■□□ 2.14
CBWD3-212ENST00000616550 PPEF1O14829 653 aaPredicted RBP28.41■■■□□ 2.14
CBWD3-212ENST00000616550 RTL5Q5HYW3 569 aaPredicted RBP28.41■■■□□ 2.14
CBWD3-212ENST00000616550 PI4KAP1Q8N8J0 262 aa28.41■■■□□ 2.14
CBWD3-212ENST00000616550 TMX4Q9H1E5 349 aaPredicted RBP28.41■■■□□ 2.14
CBWD3-212ENST00000616550 LAMB2P55268 1798 aa28.41■■■□□ 2.14
CBWD3-212ENST00000616550 KIF3CO14782 793 aa28.4■■■□□ 2.14
CBWD3-212ENST00000616550 GRIPAP1Q4V328 841 aa28.4■■■□□ 2.14
CBWD3-212ENST00000616550 DDX46Q7L014 1031 aaKnown RBP28.4■■■□□ 2.14
CBWD3-212ENST00000616550 G2E3Q7L622 706 aa28.4■■■□□ 2.14
CBWD3-212ENST00000616550 ZBTB38Q8NAP3 1195 aaPredicted RBP28.4■■■□□ 2.14
CBWD3-212ENST00000616550 NMRK2Q9NPI5 230 aa28.4■■■□□ 2.14
CBWD3-212ENST00000616550 TIAM2Q8IVF5 1701 aa28.4■■■□□ 2.14
CBWD3-212ENST00000616550 NEXNQ0ZGT2 675 aa28.39■■■□□ 2.14
CBWD3-212ENST00000616550 DIEXFQ68CQ4 756 aaKnown RBP28.39■■■□□ 2.14
CBWD3-212ENST00000616550 CWC25Q9NXE8 425 aaPredicted RBP28.39■■■□□ 2.14
CBWD3-212ENST00000616550 GLTPD2A6NH11 291 aa28.38■■■□□ 2.13
CBWD3-212ENST00000616550 IRS4O14654 1257 aaPredicted RBP28.38■■■□□ 2.13
CBWD3-212ENST00000616550 HSP90B1P14625 803 aaKnown RBP28.38■■■□□ 2.13
CBWD3-212ENST00000616550 DPY19L2Q6NUT2 758 aa28.38■■■□□ 2.13
CBWD3-212ENST00000616550 ABCC4O15439 1325 aa28.38■■■□□ 2.13
CBWD3-212ENST00000616550 BBOX1O75936 387 aa28.37■■■□□ 2.13
CBWD3-212ENST00000616550 FLIIQ13045 1269 aa28.37■■■□□ 2.13
CBWD3-212ENST00000616550 ZNF277Q9NRM2 450 aaPredicted RBP28.37■■■□□ 2.13
CBWD3-212ENST00000616550 DDX60Q8IY21 1712 aaKnown RBP28.37■■■□□ 2.13
CBWD3-212ENST00000616550 PSMD1Q99460 953 aa28.36■■■□□ 2.13
CBWD3-212ENST00000616550 PCCAP05165 728 aaPredicted RBP28.35■■■□□ 2.13
CBWD3-212ENST00000616550 FKBP5Q13451 457 aaPredicted RBP28.35■■■□□ 2.13
CBWD3-212ENST00000616550 SF3B3Q15393 1217 aaKnown RBP28.35■■■□□ 2.13
CBWD3-212ENST00000616550 RRAGCQ9HB90 399 aa28.35■■■□□ 2.13
CBWD3-212ENST00000616550 ATP6V0A2Q9Y487 856 aa28.35■■■□□ 2.13
CBWD3-212ENST00000616550 GRAPQ13588 217 aa28.34■■■□□ 2.13
CBWD3-212ENST00000616550 GRAPLQ8TC17 118 aaPredicted RBP28.34■■■□□ 2.13
CBWD3-212ENST00000616550 E9PSI1 815 aa28.33■■■□□ 2.13
CBWD3-212ENST00000616550 IARSP41252 1262 aaKnown RBP28.33■■■□□ 2.13
CBWD3-212ENST00000616550 C16orf71Q8IYS4 520 aaPredicted RBP28.33■■■□□ 2.13
CBWD3-212ENST00000616550 SP8Q8IXZ3 490 aa28.32■■■□□ 2.12
CBWD3-212ENST00000616550 TOMM70O94826 608 aa28.31■■■□□ 2.12
CBWD3-212ENST00000616550 IGKV5-2P06315 115 aa28.31■■■□□ 2.12
CBWD3-212ENST00000616550 SNED1Q8TER0 1413 aa28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms