RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 ZNF358Q9NW07 568 aa8.21□□□□□ -1.1
SMCHD1-213ENST00000609587 NOD1Q9Y239 953 aa8.21□□□□□ -1.1
SMCHD1-213ENST00000609587 NOS2P35228 1153 aa8.2□□□□□ -1.1
SMCHD1-213ENST00000609587 RAC1P63000 192 aa8.2□□□□□ -1.1
SMCHD1-213ENST00000609587 NEUROD1Q13562 356 aa8.2□□□□□ -1.1
SMCHD1-213ENST00000609587 SLC9A9Q8IVB4 645 aa8.2□□□□□ -1.1
SMCHD1-213ENST00000609587 HOMEZQ8IX15 550 aa8.2□□□□□ -1.1
SMCHD1-213ENST00000609587 HSH2DQ96JZ2 352 aa8.2□□□□□ -1.1
SMCHD1-213ENST00000609587 BRD7Q9NPI1 651 aa8.2□□□□□ -1.1
SMCHD1-213ENST00000609587 USP17L3A6NCW0 530 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 USP17L4A6NCW7 530 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 BACH1O14867 736 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 KCNQ4P56696 695 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 TYRO3Q06418 890 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 USP17L2Q6R6M4 530 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 USP17L1Q7RTZ2 530 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 FMR1NBQ8N0W7 255 aaPredicted RBP8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 RHPN1Q8TCX5 695 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 PPP1R12CQ9BZL4 782 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 JPH1Q9HDC5 661 aaPredicted RBP8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 TFIP11Q9UBB9 837 aaKnown RBP8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 SLC6A14Q9UN76 642 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 ZNF232Q9UNY5 417 aa8.19□□□□□ -1.1
SMCHD1-213ENST00000609587 PALM3A6NDB9 673 aaPredicted RBP8.18□□□□□ -1.1
SMCHD1-213ENST00000609587 TRIM50Q86XT4 487 aa8.18□□□□□ -1.1
SMCHD1-213ENST00000609587 DEPDC4Q8N2C3 294 aa8.18□□□□□ -1.1
SMCHD1-213ENST00000609587 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.18□□□□□ -1.1
SMCHD1-213ENST00000609587 NAGPAQ9UK23 515 aa8.18□□□□□ -1.1
SMCHD1-213ENST00000609587 USP21Q9UK80 565 aa8.18□□□□□ -1.1
SMCHD1-213ENST00000609587 RNF112Q9ULX5 631 aa8.18□□□□□ -1.1
SMCHD1-213ENST00000609587 ILDR2Q71H61 639 aa8.17□□□□□ -1.1
SMCHD1-213ENST00000609587 BHMTQ93088 406 aa8.17□□□□□ -1.1
SMCHD1-213ENST00000609587 NEUROD4Q9HD90 331 aa8.17□□□□□ -1.1
SMCHD1-213ENST00000609587 MAFBQ9Y5Q3 323 aaPredicted RBP8.17□□□□□ -1.1
SMCHD1-213ENST00000609587 GTF2IP78347 998 aa8.16□□□□□ -1.1
SMCHD1-213ENST00000609587 TBC1D8BQ0IIM8 1120 aa8.16□□□□□ -1.1
SMCHD1-213ENST00000609587 NUDT8Q8WV74 236 aa8.16□□□□□ -1.1
SMCHD1-213ENST00000609587 CEP63Q96MT8 703 aa8.16□□□□□ -1.1
SMCHD1-213ENST00000609587 SERTM1A2A2V5 107 aa8.15□□□□□ -1.1
SMCHD1-213ENST00000609587 ATP1A2P50993 1020 aa8.15□□□□□ -1.1
SMCHD1-213ENST00000609587 AFF1P51825 1210 aaKnown RBP8.15□□□□□ -1.1
SMCHD1-213ENST00000609587 UBE2OQ9C0C9 1292 aaKnown RBP8.15□□□□□ -1.1
SMCHD1-213ENST00000609587 MKRN1Q9UHC7 482 aaKnown RBP8.15□□□□□ -1.1
SMCHD1-213ENST00000609587 KCNH4Q9UQ05 1017 aa8.15□□□□□ -1.1
SMCHD1-213ENST00000609587 TNS4Q8IZW8 715 aa8.14□□□□□ -1.11
SMCHD1-213ENST00000609587 ZNF280CQ8ND82 737 aa8.14□□□□□ -1.11
SMCHD1-213ENST00000609587 ZBTB7BO15156 539 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-213ENST00000609587 CLDN10P78369 228 aa8.13□□□□□ -1.11
SMCHD1-213ENST00000609587 PSME1Q06323 249 aa8.13□□□□□ -1.11
SMCHD1-213ENST00000609587 PSAPL1Q6NUJ1 521 aa8.13□□□□□ -1.11
SMCHD1-213ENST00000609587 POTEAQ6S8J7 498 aa8.13□□□□□ -1.11
SMCHD1-213ENST00000609587 DMRTC2Q8IXT2 367 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-213ENST00000609587 LARGE2Q8N3Y3 721 aa8.13□□□□□ -1.11
SMCHD1-213ENST00000609587 RFX1P22670 979 aa8.12□□□□□ -1.11
SMCHD1-213ENST00000609587 NOS3P29474 1203 aa8.12□□□□□ -1.11
SMCHD1-213ENST00000609587 HIRAP54198 1017 aaPredicted RBP8.12□□□□□ -1.11
SMCHD1-213ENST00000609587 CFAP70Q5T0N1 1121 aa8.12□□□□□ -1.11
SMCHD1-213ENST00000609587 KANK4Q5T7N3 995 aaPredicted RBP8.12□□□□□ -1.11
SMCHD1-213ENST00000609587 OGFOD1Q8N543 542 aa8.12□□□□□ -1.11
SMCHD1-213ENST00000609587 COL17A1Q9UMD9 1497 aaPredicted RBP8.12□□□□□ -1.11
SMCHD1-213ENST00000609587 SFI1A8K8P3 1242 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 LMOD1P29536 600 aaPredicted RBP8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 C1orf53Q5VUE5 145 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 SIX5Q8N196 739 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 WFDC12Q8WWY7 111 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 MEGF10Q96KG7 1140 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 PHACTR1Q9C0D0 580 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 IGFLR1Q9H665 355 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 DNAJB12Q9NXW2 375 aaKnown RBP8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 KIAA1024Q9UPX6 916 aa8.11□□□□□ -1.11
SMCHD1-213ENST00000609587 IREB2P48200 963 aaKnown RBP8.1□□□□□ -1.11
SMCHD1-213ENST00000609587 CCDC102BQ68D86 513 aa8.1□□□□□ -1.11
SMCHD1-213ENST00000609587 SUSD3Q96L08 255 aa8.1□□□□□ -1.11
SMCHD1-213ENST00000609587 PPP1R15AO75807 674 aaPredicted RBP8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 DKK1O94907 266 aa8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 RASA1P20936 1047 aa8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 PSMA6P60900 246 aaKnown RBP8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 FMNL2Q96PY5 1086 aa8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 TSPAN10Q9H1Z9 355 aaPredicted RBP8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 VRTNQ9H8Y1 702 aa8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 PCMTD2Q9NV79 361 aa8.09□□□□□ -1.11
SMCHD1-213ENST00000609587 M0R2N6 131 aa8.08□□□□□ -1.12
SMCHD1-213ENST00000609587 PAX4O43316 350 aa8.08□□□□□ -1.12
SMCHD1-213ENST00000609587 PRR23CQ6ZRP0 262 aa8.08□□□□□ -1.12
SMCHD1-213ENST00000609587 TPCN2Q8NHX9 752 aa8.08□□□□□ -1.12
SMCHD1-213ENST00000609587 KRTAP4-7Q9BYR0 210 aa8.08□□□□□ -1.12
SMCHD1-213ENST00000609587 ANKIB1Q9P2G1 1089 aa8.08□□□□□ -1.12
SMCHD1-213ENST00000609587 HCN4Q9Y3Q4 1203 aa8.08□□□□□ -1.12
SMCHD1-213ENST00000609587 PTK7Q13308 1070 aa8.07□□□□□ -1.12
SMCHD1-213ENST00000609587 LCE1DQ5T752 114 aa8.07□□□□□ -1.12
SMCHD1-213ENST00000609587 LARP1Q6PKG0 1096 aaKnown RBP8.07□□□□□ -1.12
SMCHD1-213ENST00000609587 FBXO11Q86XK2 927 aa8.07□□□□□ -1.12
SMCHD1-213ENST00000609587 DTWD1Q8N5C7 304 aa8.07□□□□□ -1.12
SMCHD1-213ENST00000609587 PBXIP1Q96AQ6 731 aa8.07□□□□□ -1.12
SMCHD1-213ENST00000609587 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.06□□□□□ -1.12
SMCHD1-213ENST00000609587 FAM196BA6NMK8 535 aa8.06□□□□□ -1.12
SMCHD1-213ENST00000609587 RGS9O75916 674 aaPredicted RBP8.06□□□□□ -1.12
SMCHD1-213ENST00000609587 CD97P48960 835 aa8.06□□□□□ -1.12
SMCHD1-213ENST00000609587 GRIK5Q16478 980 aa8.06□□□□□ -1.12
SMCHD1-213ENST00000609587 MSL1Q68DK7 614 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms