RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 NYXQ9GZU5 481 aa14.95□□□□□ -0.02
LINC00539-204ENST00000608957 NMRK2Q9NPI5 230 aa14.95□□□□□ -0.02
LINC00539-204ENST00000608957 SNED1Q8TER0 1413 aa14.94□□□□□ -0.02
LINC00539-204ENST00000608957 ELL2O00472 640 aaPredicted RBP14.94□□□□□ -0.02
LINC00539-204ENST00000608957 LMNB1P20700 586 aa14.94□□□□□ -0.02
LINC00539-204ENST00000608957 CCDC27Q2M243 656 aa14.94□□□□□ -0.02
LINC00539-204ENST00000608957 CRY2Q49AN0 593 aa14.94□□□□□ -0.02
LINC00539-204ENST00000608957 WWC1Q8IX03 1113 aa14.94□□□□□ -0.02
LINC00539-204ENST00000608957 TSPYL6Q8N831 410 aa14.94□□□□□ -0.02
LINC00539-204ENST00000608957 CACNA1FO60840 1977 aa14.93□□□□□ -0.02
LINC00539-204ENST00000608957 CALD1Q05682 793 aaKnown RBP14.93□□□□□ -0.02
LINC00539-204ENST00000608957 SYNE4Q8N205 404 aa14.93□□□□□ -0.02
LINC00539-204ENST00000608957 TSR2Q969E8 191 aaKnown RBP14.93□□□□□ -0.02
LINC00539-204ENST00000608957 LTBP3Q9NS15 1303 aa14.92□□□□□ -0.02
LINC00539-204ENST00000608957 GTF2E1P29083 439 aaPredicted RBP14.92□□□□□ -0.02
LINC00539-204ENST00000608957 TCIRG1Q13488 830 aa14.92□□□□□ -0.02
LINC00539-204ENST00000608957 PARP10Q53GL7 1025 aa14.92□□□□□ -0.02
LINC00539-204ENST00000608957 NLRP10Q86W26 655 aa14.92□□□□□ -0.02
LINC00539-204ENST00000608957 ZNF428Q96B54 188 aa14.92□□□□□ -0.02
LINC00539-204ENST00000608957 DBF4Q9UBU7 674 aaPredicted RBP14.92□□□□□ -0.02
LINC00539-204ENST00000608957 WDR90Q96KV7 1748 aa14.92□□□□□ -0.02
LINC00539-204ENST00000608957 COL4A1P02462 1669 aa14.91□□□□□ -0.02
LINC00539-204ENST00000608957 PPP1R42Q7Z4L9 355 aa14.91□□□□□ -0.02
LINC00539-204ENST00000608957 PLBD2Q8NHP8 589 aa14.91□□□□□ -0.02
LINC00539-204ENST00000608957 UTP14AQ9BVJ6 771 aaKnown RBP14.91□□□□□ -0.02
LINC00539-204ENST00000608957 PHAXQ9H814 394 aaKnown RBP14.91□□□□□ -0.02
LINC00539-204ENST00000608957 NCBP3Q53F19 620 aaKnown RBP14.9□□□□□ -0.02
LINC00539-204ENST00000608957 ISCA1Q9BUE6 129 aa14.9□□□□□ -0.02
LINC00539-204ENST00000608957 HYPKQ9NX55 129 aa14.9□□□□□ -0.02
LINC00539-204ENST00000608957 ZC3H4Q9UPT8 1303 aaKnown RBP14.9□□□□□ -0.02
LINC00539-204ENST00000608957 HOXA10P31260 410 aaPredicted RBP14.89□□□□□ -0.03
LINC00539-204ENST00000608957 CCDC93Q567U6 631 aa14.89□□□□□ -0.03
LINC00539-204ENST00000608957 HSP90AB3PQ58FF7 597 aa14.89□□□□□ -0.03
LINC00539-204ENST00000608957 SLC10A5Q5PT55 438 aa14.89□□□□□ -0.03
LINC00539-204ENST00000608957 ANKRD13DQ6ZTN6 518 aa14.89□□□□□ -0.03
LINC00539-204ENST00000608957 TAOK3Q9H2K8 898 aa14.89□□□□□ -0.03
LINC00539-204ENST00000608957 SALL2Q9Y467 1007 aaPredicted RBP14.89□□□□□ -0.03
LINC00539-204ENST00000608957 COL4A5P29400 1685 aa14.89□□□□□ -0.03
LINC00539-204ENST00000608957 HCLS1P14317 486 aaPredicted RBP14.88□□□□□ -0.03
LINC00539-204ENST00000608957 ALDH1B1P30837 517 aa14.88□□□□□ -0.03
LINC00539-204ENST00000608957 RRAGCQ9HB90 399 aa14.88□□□□□ -0.03
LINC00539-204ENST00000608957 IL16Q14005 1332 aa14.88□□□□□ -0.03
LINC00539-204ENST00000608957 LRRC37AA6NMS7 1700 aa14.87□□□□□ -0.03
LINC00539-204ENST00000608957 GLTPD2A6NH11 291 aa14.87□□□□□ -0.03
LINC00539-204ENST00000608957 ATP5J2-PTCD1G3V325 749 aa14.87□□□□□ -0.03
LINC00539-204ENST00000608957 FKBP4Q02790 459 aaKnown RBP eCLIP14.87□□□□□ -0.03
LINC00539-204ENST00000608957 SOGA3Q5TF21 947 aa14.87□□□□□ -0.03
LINC00539-204ENST00000608957 SPINK5Q9NQ38 1064 aaPredicted RBP14.87□□□□□ -0.03
LINC00539-204ENST00000608957 RNF123Q5XPI4 1314 aa14.87□□□□□ -0.03
LINC00539-204ENST00000608957 MYH3P11055 1940 aa14.86□□□□□ -0.03
LINC00539-204ENST00000608957 POTECB2RU33 542 aa14.86□□□□□ -0.03
LINC00539-204ENST00000608957 TCERG1O14776 1098 aaKnown RBP14.86□□□□□ -0.03
LINC00539-204ENST00000608957 RPGRQ92834 1020 aaKnown RBP14.86□□□□□ -0.03
LINC00539-204ENST00000608957 CRAMP1Q96RY5 1269 aa14.86□□□□□ -0.03
LINC00539-204ENST00000608957 ZNF277Q9NRM2 450 aaPredicted RBP14.86□□□□□ -0.03
LINC00539-204ENST00000608957 TRMT112Q9UI30 125 aaKnown RBP14.86□□□□□ -0.03
LINC00539-204ENST00000608957 ABCC4O15439 1325 aa14.86□□□□□ -0.03
LINC00539-204ENST00000608957 KDM2BQ8NHM5 1336 aa14.86□□□□□ -0.03
LINC00539-204ENST00000608957 FANCIQ9NVI1 1328 aa14.86□□□□□ -0.03
LINC00539-204ENST00000608957 CCDC30Q5VVM6 783 aa14.85□□□□□ -0.03
LINC00539-204ENST00000608957 RBM17Q96I25 401 aaKnown RBP14.85□□□□□ -0.03
LINC00539-204ENST00000608957 NLRP3Q96P20 1036 aa14.85□□□□□ -0.03
LINC00539-204ENST00000608957 SH3TC1Q8TE82 1336 aa14.85□□□□□ -0.03
LINC00539-204ENST00000608957 TOMM70O94826 608 aa14.84□□□□□ -0.03
LINC00539-204ENST00000608957 TWISTNBQ3B726 338 aaPredicted RBP14.84□□□□□ -0.03
LINC00539-204ENST00000608957 G2E3Q7L622 706 aa14.84□□□□□ -0.03
LINC00539-204ENST00000608957 FAM89AQ96GI7 184 aa14.84□□□□□ -0.03
LINC00539-204ENST00000608957 SCN4AP35499 1836 aa14.84□□□□□ -0.03
LINC00539-204ENST00000608957 PPEF1O14829 653 aaPredicted RBP14.83□□□□□ -0.04
LINC00539-204ENST00000608957 GOLGA2Q08379 1002 aa14.83□□□□□ -0.04
LINC00539-204ENST00000608957 TRIM28Q13263 835 aaKnown RBP14.83□□□□□ -0.04
LINC00539-204ENST00000608957 RIC3Q7Z5B4 369 aa14.83□□□□□ -0.04
LINC00539-204ENST00000608957 WDR63Q8IWG1 891 aa14.83□□□□□ -0.04
LINC00539-204ENST00000608957 RTKN2Q8IZC4 609 aa14.83□□□□□ -0.04
LINC00539-204ENST00000608957 MYD88Q99836 296 aa14.83□□□□□ -0.04
LINC00539-204ENST00000608957 ZNF521Q96K83 1311 aa14.83□□□□□ -0.04
LINC00539-204ENST00000608957 SPEF2Q9C093 1822 aa14.82□□□□□ -0.04
LINC00539-204ENST00000608957 DUOX1Q9NRD9 1551 aa14.82□□□□□ -0.04
LINC00539-204ENST00000608957 DDNO94850 711 aaPredicted RBP14.82□□□□□ -0.04
LINC00539-204ENST00000608957 HSPA6P17066 643 aa14.82□□□□□ -0.04
LINC00539-204ENST00000608957 IARSP41252 1262 aaKnown RBP14.82□□□□□ -0.04
LINC00539-204ENST00000608957 RTL5Q5HYW3 569 aaPredicted RBP14.82□□□□□ -0.04
LINC00539-204ENST00000608957 RBM46Q8TBY0 533 aaKnown RBP14.82□□□□□ -0.04
LINC00539-204ENST00000608957 PSMD1Q99460 953 aa14.82□□□□□ -0.04
LINC00539-204ENST00000608957 LTBP1Q14766 1721 aa14.82□□□□□ -0.04
LINC00539-204ENST00000608957 ZNF541Q9H0D2 1346 aa14.82□□□□□ -0.04
LINC00539-204ENST00000608957 EXOSC9Q06265 439 aaKnown RBP14.81□□□□□ -0.04
LINC00539-204ENST00000608957 JARID2Q92833 1246 aaPredicted RBP14.81□□□□□ -0.04
LINC00539-204ENST00000608957 METTL22Q9BUU2 404 aaPredicted RBP14.81□□□□□ -0.04
LINC00539-204ENST00000608957 VAMP4O75379 141 aa14.8□□□□□ -0.04
LINC00539-204ENST00000608957 CC2D2BQ6DHV5 1058 aa14.8□□□□□ -0.04
LINC00539-204ENST00000608957 MAP3K2Q9Y2U5 619 aa14.8□□□□□ -0.04
LINC00539-204ENST00000608957 ATP6V0A2Q9Y487 856 aa14.8□□□□□ -0.04
LINC00539-204ENST00000608957 PI4KAP2A4QPH2 592 aa14.79□□□□□ -0.04
LINC00539-204ENST00000608957 IRS4O14654 1257 aaPredicted RBP14.79□□□□□ -0.04
LINC00539-204ENST00000608957 IGKV5-2P06315 115 aa14.79□□□□□ -0.04
LINC00539-204ENST00000608957 GRAPQ13588 217 aa14.79□□□□□ -0.04
LINC00539-204ENST00000608957 SF3B3Q15393 1217 aaKnown RBP14.79□□□□□ -0.04
LINC00539-204ENST00000608957 DPY19L2Q6NUT2 758 aa14.79□□□□□ -0.04
LINC00539-204ENST00000608957 PI4KAP1Q8N8J0 262 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms