RNA–Protein interactions for RNA: ENST00000603232.6

CELF4-223, Transcript of CUGBP Elav-like family member 4, human

APPRIS ALT1 TSL 1 (best) BASIC

Gene CELF4, Length 1,906 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CELF4-223	ENST00000603232	CCDC30	Q5VVM6	783 aa		18.73	■□□□□ 0.59
CELF4-223	ENST00000603232	NECTIN2	Q92692	538 aa		18.73	■□□□□ 0.59
CELF4-223	ENST00000603232	SRCIN1	Q9C0H9	1055 aa		18.73	■□□□□ 0.59
CELF4-223	ENST00000603232	STAP2	Q9UGK3	403 aa		18.73	■□□□□ 0.59
CELF4-223	ENST00000603232	ZNF831	Q5JPB2	1677 aa		18.73	■□□□□ 0.59
CELF4-223	ENST00000603232	RREB1	Q92766	1687 aa		18.73	■□□□□ 0.59
CELF4-223	ENST00000603232	CIC	Q96RK0	1608 aa	Predicted RBP	18.73	■□□□□ 0.59
CELF4-223	ENST00000603232	TXNRD1	Q16881	649 aa		18.72	■□□□□ 0.59
CELF4-223	ENST00000603232	USP16	Q9Y5T5	823 aa		18.72	■□□□□ 0.59
CELF4-223	ENST00000603232	NUP188	Q5SRE5	1749 aa		18.72	■□□□□ 0.59
CELF4-223	ENST00000603232	PLSCR1	O15162	318 aa		18.72	■□□□□ 0.59
CELF4-223	ENST00000603232	ATP8B2	P98198	1209 aa		18.72	■□□□□ 0.59
CELF4-223	ENST00000603232	CAMKK2	Q96RR4	588 aa		18.72	■□□□□ 0.59
CELF4-223	ENST00000603232	PIP4K2A	P48426	406 aa	Predicted RBP	18.71	■□□□□ 0.59
CELF4-223	ENST00000603232	NASP	P49321	788 aa	Predicted RBP	18.71	■□□□□ 0.59
CELF4-223	ENST00000603232	LINC00116	Q8NCU8	138 aa		18.71	■□□□□ 0.59
CELF4-223	ENST00000603232	LRRCC1	Q9C099	1032 aa		18.71	■□□□□ 0.59
CELF4-223	ENST00000603232	SNRPA1	P09661	255 aa	Known RBP	18.7	■□□□□ 0.58
CELF4-223	ENST00000603232	BAG6	P46379	1132 aa		18.7	■□□□□ 0.58
CELF4-223	ENST00000603232	FLII	Q13045	1269 aa		18.7	■□□□□ 0.58
CELF4-223	ENST00000603232	EIF2S2	P20042	333 aa	Known RBP	18.7	■□□□□ 0.58
CELF4-223	ENST00000603232	CUL4A	Q13619	759 aa		18.7	■□□□□ 0.58
CELF4-223	ENST00000603232	MCTP1	Q6DN14	999 aa		18.7	■□□□□ 0.58
CELF4-223	ENST00000603232	ESYT1	Q9BSJ8	1104 aa		18.7	■□□□□ 0.58
CELF4-223	ENST00000603232	C4B	P0C0L5	1744 aa		18.7	■□□□□ 0.58
CELF4-223	ENST00000603232		F6X3S4	739 aa		18.69	■□□□□ 0.58
CELF4-223	ENST00000603232	MX1	P20591	662 aa		18.69	■□□□□ 0.58
CELF4-223	ENST00000603232	HS1BP3	Q53T59	392 aa		18.69	■□□□□ 0.58
CELF4-223	ENST00000603232	SLC4A10	Q6U841	1118 aa		18.69	■□□□□ 0.58
CELF4-223	ENST00000603232	INTS4	Q96HW7	963 aa	Known RBP	18.69	■□□□□ 0.58
CELF4-223	ENST00000603232	ZDHHC9	Q9Y397	364 aa		18.69	■□□□□ 0.58
CELF4-223	ENST00000603232	MCC	P23508	829 aa		18.68	■□□□□ 0.58
CELF4-223	ENST00000603232	VSIG10	Q8N0Z9	540 aa		18.68	■□□□□ 0.58
CELF4-223	ENST00000603232	ANP32B	Q92688	251 aa	Known RBP	18.68	■□□□□ 0.58
CELF4-223	ENST00000603232	CCDC125	Q86Z20	511 aa		18.68	■□□□□ 0.58
CELF4-223	ENST00000603232	ANXA1	P04083	346 aa		18.67	■□□□□ 0.58
CELF4-223	ENST00000603232	CYP19A1	P11511	503 aa	Predicted RBP	18.67	■□□□□ 0.58
CELF4-223	ENST00000603232	SMIM5	Q71RC9	77 aa		18.67	■□□□□ 0.58
CELF4-223	ENST00000603232	ZGPAT	Q8N5A5	531 aa	Known RBP	18.67	■□□□□ 0.58
CELF4-223	ENST00000603232	APBB1	O00213	710 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	A1BG	P04217	495 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	PKP1	Q13835	747 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	ZSCAN23	Q3MJ62	389 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	TPM2	P07951	284 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	CHML	P26374	656 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	HSP90AA2P	Q14568	343 aa	Predicted RBP	18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	HDGFL1	Q5TGJ6	251 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	EXOC6B	Q9Y2D4	811 aa		18.66	■□□□□ 0.58
CELF4-223	ENST00000603232	CRKL	P46109	303 aa	Known RBP	18.65	■□□□□ 0.58
CELF4-223	ENST00000603232	PROSER3	Q2NL68	480 aa		18.65	■□□□□ 0.58
CELF4-223	ENST00000603232	SLC27A3	Q5K4L6	730 aa		18.65	■□□□□ 0.58
CELF4-223	ENST00000603232	TMX3	Q96JJ7	454 aa		18.65	■□□□□ 0.58
CELF4-223	ENST00000603232	UBR3	Q6ZT12	1888 aa		18.65	■□□□□ 0.58
CELF4-223	ENST00000603232	FKBP5	Q13451	457 aa	Predicted RBP	18.64	■□□□□ 0.58
CELF4-223	ENST00000603232	ZSCAN30	Q86W11	494 aa		18.64	■□□□□ 0.58
CELF4-223	ENST00000603232	AMIGO3	Q86WK7	504 aa		18.64	■□□□□ 0.58
CELF4-223	ENST00000603232	ZBTB1	Q9Y2K1	713 aa		18.64	■□□□□ 0.58
CELF4-223	ENST00000603232	PNMA6E	A0A0J9YXQ4	647 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	NBPF26	B4DH59	902 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	BRD1	O95696	1058 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	MBD3	O95983	291 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	NEK4	P51957	841 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	NBPF14	Q5TI25	921 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	NBPF10	Q6P3W6	841 aa	Known RBP	18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	NBPF15	Q8N660	670 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	SSH3	Q8TE77	659 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	PDLIM2	Q96JY6	352 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	CHPF2	Q9P2E5	772 aa		18.64	■□□□□ 0.57
CELF4-223	ENST00000603232	RAB11FIP3	O75154	756 aa		18.63	■□□□□ 0.57
CELF4-223	ENST00000603232	HOXB7	P09629	217 aa		18.63	■□□□□ 0.57
CELF4-223	ENST00000603232	ZNF827	Q17R98	1081 aa		18.63	■□□□□ 0.57
CELF4-223	ENST00000603232	CAVIN1	Q6NZI2	390 aa	Known RBP	18.63	■□□□□ 0.57
CELF4-223	ENST00000603232	INTS5	Q6P9B9	1019 aa	Known RBP	18.63	■□□□□ 0.57
CELF4-223	ENST00000603232	CHMP4A	Q9BY43	222 aa		18.63	■□□□□ 0.57
CELF4-223	ENST00000603232	OFD1	O75665	1012 aa		18.62	■□□□□ 0.57
CELF4-223	ENST00000603232	STARD3NL	O95772	234 aa		18.62	■□□□□ 0.57
CELF4-223	ENST00000603232	MYL6B	P14649	208 aa		18.62	■□□□□ 0.57
CELF4-223	ENST00000603232	PDIA6	Q15084	440 aa		18.62	■□□□□ 0.57
CELF4-223	ENST00000603232	GPT2	Q8TD30	523 aa		18.62	■□□□□ 0.57
CELF4-223	ENST00000603232	USP44	Q9H0E7	712 aa		18.62	■□□□□ 0.57
CELF4-223	ENST00000603232	CCDC87	Q9NVE4	849 aa		18.62	■□□□□ 0.57
CELF4-223	ENST00000603232	PRPF40A	O75400	957 aa	Known RBP	18.61	■□□□□ 0.57
CELF4-223	ENST00000603232	TEX13A	Q9BXU3	409 aa	Predicted RBP	18.61	■□□□□ 0.57
CELF4-223	ENST00000603232	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.61	■□□□□ 0.57
CELF4-223	ENST00000603232	POLA2	Q14181	598 aa		18.61	■□□□□ 0.57
CELF4-223	ENST00000603232	CNTNAP4	Q9C0A0	1308 aa		18.6	■□□□□ 0.57
CELF4-223	ENST00000603232	GNPAT	O15228	680 aa		18.6	■□□□□ 0.57
CELF4-223	ENST00000603232	GLIPR1L2	Q4G1C9	344 aa		18.6	■□□□□ 0.57
CELF4-223	ENST00000603232	LRSAM1	Q6UWE0	723 aa		18.6	■□□□□ 0.57
CELF4-223	ENST00000603232	LRRFIP2	Q9Y608	721 aa	Known RBP	18.6	■□□□□ 0.57
CELF4-223	ENST00000603232	C4A	P0C0L4	1744 aa		18.6	■□□□□ 0.57
CELF4-223	ENST00000603232	TERF1	P54274	439 aa		18.59	■□□□□ 0.57
CELF4-223	ENST00000603232	UBTFL1	P0CB47	393 aa	Predicted RBP	18.59	■□□□□ 0.57
CELF4-223	ENST00000603232	AKT1S1	Q96B36	256 aa		18.59	■□□□□ 0.57
CELF4-223	ENST00000603232	AK7	Q96M32	723 aa		18.59	■□□□□ 0.57
CELF4-223	ENST00000603232	RBSN	Q9H1K0	784 aa		18.59	■□□□□ 0.57
CELF4-223	ENST00000603232	PHF14	O94880	888 aa		18.58	■□□□□ 0.56
CELF4-223	ENST00000603232	HSPA4	P34932	840 aa		18.58	■□□□□ 0.56
CELF4-223	ENST00000603232	LRP10	Q7Z4F1	713 aa		18.58	■□□□□ 0.56
CELF4-223	ENST00000603232	PHAX	Q9H814	394 aa	Known RBP	18.58	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms