RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 ARFGEF2Q9Y6D5 1785 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 GPTP24298 496 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 HOXA10P31260 410 aaPredicted RBP12.59□□□□□ -0.39
VRK3-224ENST00000601849 DEFB115Q30KQ5 88 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 LARGE2Q8N3Y3 721 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 CRAMP1Q96RY5 1269 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 VPS33BQ9H267 617 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 TSPYL4Q9UJ04 414 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 SCN4AP35499 1836 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 CACNA1SQ13698 1873 aa12.59□□□□□ -0.39
VRK3-224ENST00000601849 ITGBL1O95965 494 aaPredicted RBP12.58□□□□□ -0.4
VRK3-224ENST00000601849 CTCFP49711 727 aaPredicted RBP12.58□□□□□ -0.4
VRK3-224ENST00000601849 LMOD3Q0VAK6 560 aa12.58□□□□□ -0.4
VRK3-224ENST00000601849 HSP90AB3PQ58FF7 597 aa12.58□□□□□ -0.4
VRK3-224ENST00000601849 OLFM4Q6UX06 510 aa12.58□□□□□ -0.4
VRK3-224ENST00000601849 GIGYF2Q6Y7W6 1299 aaKnown RBP12.58□□□□□ -0.4
VRK3-224ENST00000601849 SUPT20HQ8NEM7 779 aa12.58□□□□□ -0.4
VRK3-224ENST00000601849 BABAM1Q9NWV8 329 aa12.58□□□□□ -0.4
VRK3-224ENST00000601849 ABT1Q9ULW3 272 aaKnown RBP12.58□□□□□ -0.4
VRK3-224ENST00000601849 RNF123Q5XPI4 1314 aa12.58□□□□□ -0.4
VRK3-224ENST00000601849 ZNF541Q9H0D2 1346 aa12.58□□□□□ -0.4
VRK3-224ENST00000601849 IBTKQ9P2D0 1353 aaPredicted RBP12.57□□□□□ -0.4
VRK3-224ENST00000601849 PPEF1O14829 653 aaPredicted RBP12.57□□□□□ -0.4
VRK3-224ENST00000601849 EIF2S2P20042 333 aaKnown RBP12.57□□□□□ -0.4
VRK3-224ENST00000601849 MAP2K1Q02750 393 aaPredicted RBP12.57□□□□□ -0.4
VRK3-224ENST00000601849 SUSD4Q5VX71 490 aa12.57□□□□□ -0.4
VRK3-224ENST00000601849 TTLL7Q6ZT98 887 aa12.57□□□□□ -0.4
VRK3-224ENST00000601849 NIM1KQ8IY84 436 aa12.57□□□□□ -0.4
VRK3-224ENST00000601849 ZNF34Q8IZ26 560 aa12.57□□□□□ -0.4
VRK3-224ENST00000601849 PLEKHF1Q96S99 279 aa12.57□□□□□ -0.4
VRK3-224ENST00000601849 UTP14AQ9BVJ6 771 aaKnown RBP12.57□□□□□ -0.4
VRK3-224ENST00000601849 PRDM10Q9NQV6 1147 aa12.57□□□□□ -0.4
VRK3-224ENST00000601849 TCERG1O14776 1098 aaKnown RBP12.56□□□□□ -0.4
VRK3-224ENST00000601849 BBOX1O75936 387 aa12.56□□□□□ -0.4
VRK3-224ENST00000601849 VEGFBP49765 207 aa12.56□□□□□ -0.4
VRK3-224ENST00000601849 RIPK4P57078 832 aa12.56□□□□□ -0.4
VRK3-224ENST00000601849 MAP1SQ66K74 1059 aaPredicted RBP12.56□□□□□ -0.4
VRK3-224ENST00000601849 USP50Q70EL3 339 aaPredicted RBP12.56□□□□□ -0.4
VRK3-224ENST00000601849 BEGAINQ9BUH8 593 aa12.56□□□□□ -0.4
VRK3-224ENST00000601849 ECE1P42892 770 aa12.55□□□□□ -0.4
VRK3-224ENST00000601849 RIC1Q4ADV7 1423 aa12.54□□□□□ -0.4
VRK3-224ENST00000601849 FOXN1O15353 648 aa12.54□□□□□ -0.4
VRK3-224ENST00000601849 PPIP5K2O43314 1243 aa12.54□□□□□ -0.4
VRK3-224ENST00000601849 RALBP1Q15311 655 aa12.54□□□□□ -0.4
VRK3-224ENST00000601849 SLC10A5Q5PT55 438 aa12.54□□□□□ -0.4
VRK3-224ENST00000601849 DDX46Q7L014 1031 aaKnown RBP12.54□□□□□ -0.4
VRK3-224ENST00000601849 THUMPD2Q9BTF0 503 aaKnown RBP12.54□□□□□ -0.4
VRK3-224ENST00000601849 ATP6V0A2Q9Y487 856 aa12.54□□□□□ -0.4
VRK3-224ENST00000601849 RASSF10A6NK89 507 aa12.53□□□□□ -0.4
VRK3-224ENST00000601849 NTSR2O95665 410 aa12.53□□□□□ -0.4
VRK3-224ENST00000601849 TNIP1Q15025 636 aa12.53□□□□□ -0.4
VRK3-224ENST00000601849 DPP8Q6V1X1 898 aaPredicted RBP12.53□□□□□ -0.4
VRK3-224ENST00000601849 PAXIP1Q6ZW49 1069 aaPredicted RBP12.53□□□□□ -0.4
VRK3-224ENST00000601849 DDX21Q9NR30 783 aaKnown RBP eCLIP12.53□□□□□ -0.4
VRK3-224ENST00000601849 ADARB2Q9NS39 739 aaKnown RBP12.53□□□□□ -0.4
VRK3-224ENST00000601849 UBN2Q6ZU65 1347 aa12.53□□□□□ -0.4
VRK3-224ENST00000601849 ABCC12Q96J65 1359 aa12.53□□□□□ -0.4
VRK3-224ENST00000601849 LAMB4A4D0S4 1761 aa12.53□□□□□ -0.4
VRK3-224ENST00000601849 AIMP1Q12904 312 aaKnown RBP12.52□□□□□ -0.41
VRK3-224ENST00000601849 TMC4Q7Z404 712 aa12.52□□□□□ -0.41
VRK3-224ENST00000601849 SP8Q8IXZ3 490 aa12.52□□□□□ -0.41
VRK3-224ENST00000601849 MPNDQ8N594 471 aa12.52□□□□□ -0.41
VRK3-224ENST00000601849 WBP1LQ9NX94 342 aa12.52□□□□□ -0.41
VRK3-224ENST00000601849 TRMT112Q9UI30 125 aaKnown RBP12.52□□□□□ -0.41
VRK3-224ENST00000601849 ZNRF3Q9ULT6 936 aa12.52□□□□□ -0.41
VRK3-224ENST00000601849 WDR33Q9C0J8 1336 aaKnown RBP12.52□□□□□ -0.41
VRK3-224ENST00000601849 EPS15P42566 896 aa12.51□□□□□ -0.41
VRK3-224ENST00000601849 COPS6Q7L5N1 327 aa12.51□□□□□ -0.41
VRK3-224ENST00000601849 BCL2L13Q9BXK5 485 aa12.51□□□□□ -0.41
VRK3-224ENST00000601849 NUP98P52948 1817 aa12.51□□□□□ -0.41
VRK3-224ENST00000601849 TMPOP42166 694 aaKnown RBP12.5□□□□□ -0.41
VRK3-224ENST00000601849 SCNN1DP51172 638 aa12.5□□□□□ -0.41
VRK3-224ENST00000601849 LBX1P52954 281 aa12.5□□□□□ -0.41
VRK3-224ENST00000601849 TCIRG1Q13488 830 aa12.5□□□□□ -0.41
VRK3-224ENST00000601849 WDR43Q15061 677 aaKnown RBP eCLIP12.5□□□□□ -0.41
VRK3-224ENST00000601849 AOC3Q16853 763 aa12.5□□□□□ -0.41
VRK3-224ENST00000601849 LAS1LQ9Y4W2 734 aaKnown RBP12.5□□□□□ -0.41
VRK3-224ENST00000601849 SH3TC1Q8TE82 1336 aa12.5□□□□□ -0.41
VRK3-224ENST00000601849 KDM3BQ7LBC6 1761 aa12.5□□□□□ -0.41
VRK3-224ENST00000601849 ABCC4O15439 1325 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 HSP90B1P14625 803 aaKnown RBP12.49□□□□□ -0.41
VRK3-224ENST00000601849 GRM1Q13255 1194 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 PDIA6Q15084 440 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 NEUROD2Q15784 382 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 CIAPIN1Q6FI81 312 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 NLRP10Q86W26 655 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 NECTIN2Q92692 538 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 GPR101Q96P66 508 aaPredicted RBP12.49□□□□□ -0.41
VRK3-224ENST00000601849 RTFDC1Q9BY42 306 aaPredicted RBP12.49□□□□□ -0.41
VRK3-224ENST00000601849 GPRC5DQ9NZD1 345 aa12.49□□□□□ -0.41
VRK3-224ENST00000601849 CDHR2Q9BYE9 1310 aa12.48□□□□□ -0.41
VRK3-224ENST00000601849 H7C1D1 291 aa12.48□□□□□ -0.41
VRK3-224ENST00000601849 HCLS1P14317 486 aaPredicted RBP12.48□□□□□ -0.41
VRK3-224ENST00000601849 MAP2K2P36507 400 aa12.48□□□□□ -0.41
VRK3-224ENST00000601849 CXCL9Q07325 125 aa12.48□□□□□ -0.41
VRK3-224ENST00000601849 GRAPQ13588 217 aa12.48□□□□□ -0.41
VRK3-224ENST00000601849 GRAPLQ8TC17 118 aaPredicted RBP12.48□□□□□ -0.41
VRK3-224ENST00000601849 XAGE3Q8WTP9 111 aa12.48□□□□□ -0.41
VRK3-224ENST00000601849 ZC3H15Q8WU90 426 aaKnown RBP12.48□□□□□ -0.41
VRK3-224ENST00000601849 CAPNS2Q96L46 248 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms