RNA–Protein interactions for RNA: ENST00000600948.5

PLD3-223, Transcript of phospholipase D family member 3, human

TSL 2

Gene PLD3, Length 536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PLD3-223	ENST00000600948	LAMB2	P55268	1798 aa		20.03	■□□□□ 0.8
PLD3-223	ENST00000600948	TIAM2	Q8IVF5	1701 aa		20.03	■□□□□ 0.8
PLD3-223	ENST00000600948	PLBD2	Q8NHP8	589 aa		20.03	■□□□□ 0.8
PLD3-223	ENST00000600948	SALL2	Q9Y467	1007 aa	Predicted RBP	20.03	■□□□□ 0.8
PLD3-223	ENST00000600948	ANKRD13D	Q6ZTN6	518 aa		20.02	■□□□□ 0.8
PLD3-223	ENST00000600948	NLRP10	Q86W26	655 aa		20.02	■□□□□ 0.8
PLD3-223	ENST00000600948	C7orf43	Q8WVR3	580 aa		20.02	■□□□□ 0.8
PLD3-223	ENST00000600948	UTP14A	Q9BVJ6	771 aa	Known RBP	20.02	■□□□□ 0.8
PLD3-223	ENST00000600948	LMNB1	P20700	586 aa		20.01	■□□□□ 0.79
PLD3-223	ENST00000600948	WDR63	Q8IWG1	891 aa		20.01	■□□□□ 0.79
PLD3-223	ENST00000600948	RNF123	Q5XPI4	1314 aa		20.01	■□□□□ 0.79
PLD3-223	ENST00000600948	CCDC30	Q5VVM6	783 aa		20	■□□□□ 0.79
PLD3-223	ENST00000600948	PHAX	Q9H814	394 aa	Known RBP	20	■□□□□ 0.79
PLD3-223	ENST00000600948	LTBP3	Q9NS15	1303 aa		20	■□□□□ 0.79
PLD3-223	ENST00000600948	SLC10A5	Q5PT55	438 aa		19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	SOGA3	Q5TF21	947 aa		19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	C3orf67	Q6ZVT6	689 aa		19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	ISCA1	Q9BUE6	129 aa		19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	CHMP4A	Q9BY43	222 aa		19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	CACNA1F	O60840	1977 aa		19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	FANCI	Q9NVI1	1328 aa		19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	DDX60	Q8IY21	1712 aa	Known RBP	19.99	■□□□□ 0.79
PLD3-223	ENST00000600948	ALDH1B1	P30837	517 aa		19.98	■□□□□ 0.79
PLD3-223	ENST00000600948	HOXA10	P31260	410 aa	Predicted RBP	19.98	■□□□□ 0.79
PLD3-223	ENST00000600948	C1QTNF8	P60827	252 aa		19.98	■□□□□ 0.79
PLD3-223	ENST00000600948	ZC3H4	Q9UPT8	1303 aa	Known RBP	19.98	■□□□□ 0.79
PLD3-223	ENST00000600948	GOLGA2	Q08379	1002 aa		19.97	■□□□□ 0.79
PLD3-223	ENST00000600948	TWISTNB	Q3B726	338 aa	Predicted RBP	19.97	■□□□□ 0.79
PLD3-223	ENST00000600948	RPGR	Q92834	1020 aa	Known RBP	19.97	■□□□□ 0.79
PLD3-223	ENST00000600948	CCDC93	Q567U6	631 aa		19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	OLFM4	Q6UX06	510 aa		19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	SYNE4	Q8N205	404 aa		19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	NLRP3	Q96P20	1036 aa		19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	TAOK3	Q9H2K8	898 aa		19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	SPINK5	Q9NQ38	1064 aa	Predicted RBP	19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	TRMT112	Q9UI30	125 aa	Known RBP	19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	SH3TC1	Q8TE82	1336 aa		19.96	■□□□□ 0.79
PLD3-223	ENST00000600948	SNED1	Q8TER0	1413 aa		19.95	■□□□□ 0.78
PLD3-223	ENST00000600948	ATP5J2-PTCD1	G3V325	749 aa		19.95	■□□□□ 0.78
PLD3-223	ENST00000600948	KIF3C	O14782	793 aa		19.95	■□□□□ 0.78
PLD3-223	ENST00000600948	TRIM28	Q13263	835 aa	Known RBP	19.95	■□□□□ 0.78
PLD3-223	ENST00000600948	RIC3	Q7Z5B4	369 aa		19.95	■□□□□ 0.78
PLD3-223	ENST00000600948	TCERG1	O14776	1098 aa	Known RBP	19.94	■□□□□ 0.78
PLD3-223	ENST00000600948	HCLS1	P14317	486 aa	Predicted RBP	19.94	■□□□□ 0.78
PLD3-223	ENST00000600948	ZNF428	Q96B54	188 aa		19.94	■□□□□ 0.78
PLD3-223	ENST00000600948	CRAMP1	Q96RY5	1269 aa		19.94	■□□□□ 0.78
PLD3-223	ENST00000600948	NMRK2	Q9NPI5	230 aa		19.94	■□□□□ 0.78
PLD3-223	ENST00000600948	ZNF521	Q96K83	1311 aa		19.94	■□□□□ 0.78
PLD3-223	ENST00000600948	TAF1	P21675	1872 aa		19.93	■□□□□ 0.78
PLD3-223	ENST00000600948	RBM17	Q96I25	401 aa	Known RBP	19.93	■□□□□ 0.78
PLD3-223	ENST00000600948	STK31	Q9BXU1	1019 aa		19.93	■□□□□ 0.78
PLD3-223	ENST00000600948	FKBP4	Q02790	459 aa	Known RBP eCLIP	19.92	■□□□□ 0.78
PLD3-223	ENST00000600948	KDM2B	Q8NHM5	1336 aa		19.92	■□□□□ 0.78
PLD3-223	ENST00000600948	DDX58	O95786	925 aa	Known RBP	19.91	■□□□□ 0.78
PLD3-223	ENST00000600948	EXOSC9	Q06265	439 aa	Known RBP	19.91	■□□□□ 0.78
PLD3-223	ENST00000600948	RTKN2	Q8IZC4	609 aa		19.91	■□□□□ 0.78
PLD3-223	ENST00000600948	FAM89A	Q96GI7	184 aa		19.91	■□□□□ 0.78
PLD3-223	ENST00000600948	MYD88	Q99836	296 aa		19.91	■□□□□ 0.78
PLD3-223	ENST00000600948	CCER2	I3L3R5	266 aa		19.9	■□□□□ 0.78
PLD3-223	ENST00000600948	VAMP4	O75379	141 aa		19.9	■□□□□ 0.78
PLD3-223	ENST00000600948	G2E3	Q7L622	706 aa		19.9	■□□□□ 0.78
PLD3-223	ENST00000600948	SLC51A	Q86UW1	340 aa		19.9	■□□□□ 0.78
PLD3-223	ENST00000600948	METTL22	Q9BUU2	404 aa	Predicted RBP	19.9	■□□□□ 0.78
PLD3-223	ENST00000600948	MYH16	Q9H6N6	1097 aa		19.9	■□□□□ 0.78
PLD3-223	ENST00000600948	ABCC4	O15439	1325 aa		19.9	■□□□□ 0.78
PLD3-223	ENST00000600948	GLTPD2	A6NH11	291 aa		19.89	■□□□□ 0.77
PLD3-223	ENST00000600948	PPEF1	O14829	653 aa	Predicted RBP	19.89	■□□□□ 0.77
PLD3-223	ENST00000600948	CC2D2B	Q6DHV5	1058 aa		19.89	■□□□□ 0.77
PLD3-223	ENST00000600948	KSR2	Q6VAB6	950 aa		19.89	■□□□□ 0.77
PLD3-223	ENST00000600948	PI4KAP2	A4QPH2	592 aa		19.88	■□□□□ 0.77
PLD3-223	ENST00000600948	SLC4A2	P04920	1241 aa		19.88	■□□□□ 0.77
PLD3-223	ENST00000600948	PI4KAP1	Q8N8J0	262 aa		19.88	■□□□□ 0.77
PLD3-223	ENST00000600948	CCDC191	Q8NCU4	936 aa		19.88	■□□□□ 0.77
PLD3-223	ENST00000600948	ZNF277	Q9NRM2	450 aa	Predicted RBP	19.88	■□□□□ 0.77
PLD3-223	ENST00000600948	MAP3K2	Q9Y2U5	619 aa		19.88	■□□□□ 0.77
PLD3-223	ENST00000600948	WDR90	Q96KV7	1748 aa		19.88	■□□□□ 0.77
PLD3-223	ENST00000600948	RTL5	Q5HYW3	569 aa	Predicted RBP	19.87	■□□□□ 0.77
PLD3-223	ENST00000600948	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	19.87	■□□□□ 0.77
PLD3-223	ENST00000600948	PSMD1	Q99460	953 aa		19.87	■□□□□ 0.77
PLD3-223	ENST00000600948	IRS4	O14654	1257 aa	Predicted RBP	19.86	■□□□□ 0.77
PLD3-223	ENST00000600948	FLII	Q13045	1269 aa		19.86	■□□□□ 0.77
PLD3-223	ENST00000600948	RRAGC	Q9HB90	399 aa		19.86	■□□□□ 0.77
PLD3-223	ENST00000600948	LRRC37A	A6NMS7	1700 aa		19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	PCCA	P05165	728 aa	Predicted RBP	19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	IGKV5-2	P06315	115 aa		19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	GRAP	Q13588	217 aa		19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	SF3B3	Q15393	1217 aa	Known RBP	19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	GRIPAP1	Q4V328	841 aa		19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	DDX46	Q7L014	1031 aa	Known RBP	19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	GRAPL	Q8TC17	118 aa	Predicted RBP	19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	CWC25	Q9NXE8	425 aa	Predicted RBP	19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	ATP6V0A2	Q9Y487	856 aa		19.85	■□□□□ 0.77
PLD3-223	ENST00000600948	COL4A1	P02462	1669 aa		19.84	■□□□□ 0.77
PLD3-223	ENST00000600948	MYH3	P11055	1940 aa		19.84	■□□□□ 0.77
PLD3-223	ENST00000600948	BBOX1	O75936	387 aa		19.84	■□□□□ 0.77
PLD3-223	ENST00000600948	TOMM70	O94826	608 aa		19.84	■□□□□ 0.77
PLD3-223	ENST00000600948	IARS	P41252	1262 aa	Known RBP	19.84	■□□□□ 0.77
PLD3-223	ENST00000600948	DPY19L2	Q6NUT2	758 aa		19.84	■□□□□ 0.77
PLD3-223	ENST00000600948	COL4A5	P29400	1685 aa		19.84	■□□□□ 0.77
PLD3-223	ENST00000600948	NEXN	Q0ZGT2	675 aa		19.82	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms