RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TCERG1O14776 1098 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 ECE1P42892 770 aa11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 CCDC93Q567U6 631 aa11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 TAF1DQ9H5J8 278 aaPredicted RBP11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 TSKSQ9UJT2 592 aa11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 ABT1Q9ULW3 272 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 PDZRN3Q9UPQ7 1066 aa11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 COL4A5P29400 1685 aa11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 LTBP1Q14766 1721 aa11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 RNF123Q5XPI4 1314 aa11.54□□□□□ -0.56
SHKBP1-220ENST00000599716 DLG5Q8TDM6 1919 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 NPR1P16066 1061 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 GPTP24298 496 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 FKBP4Q02790 459 aaKnown RBP eCLIP11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 FMR1Q06787 632 aaKnown RBP eCLIP11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 TTLL7Q6ZT98 887 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 CAPNS2Q96L46 248 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 GPR101Q96P66 508 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 CLEC11AQ9Y240 323 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 NUDCQ9Y266 331 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 ZNF652Q9Y2D9 606 aa11.53□□□□□ -0.56
SHKBP1-220ENST00000599716 LAMB4A4D0S4 1761 aa11.52□□□□□ -0.57
SHKBP1-220ENST00000599716 MAP1SQ66K74 1059 aaPredicted RBP11.52□□□□□ -0.57
SHKBP1-220ENST00000599716 CLEC4GQ6UXB4 293 aa11.52□□□□□ -0.57
SHKBP1-220ENST00000599716 TPTE2Q6XPS3 522 aa11.52□□□□□ -0.57
SHKBP1-220ENST00000599716 SYNE4Q8N205 404 aa11.52□□□□□ -0.57
SHKBP1-220ENST00000599716 RRP7AQ9Y3A4 280 aaKnown RBP11.52□□□□□ -0.57
SHKBP1-220ENST00000599716 BRCA2P51587 3418 aa11.52□□□□□ -0.57
SHKBP1-220ENST00000599716 SCN4AP35499 1836 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 NUP98P52948 1817 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 KLRG2A4D1S0 409 aaPredicted RBP11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 MYL6BP14649 208 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 GTF2E1P29083 439 aaPredicted RBP11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 SOGA3Q5TF21 947 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 C3orf67Q6ZVT6 689 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 ZNF428Q96B54 188 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 L3MBTL3Q96JM7 780 aaPredicted RBP11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 ZBTB3Q9H5J0 574 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 TRIOBPQ9H2D6 2365 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 CEP290O15078 2479 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 KDM3BQ7LBC6 1761 aa11.51□□□□□ -0.57
SHKBP1-220ENST00000599716 ADAMTSL1Q8N6G6 1762 aa11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 EPHX2P34913 555 aa11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 MAP2K2P36507 400 aa11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 IARSP41252 1262 aaKnown RBP11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 FXR1P51114 621 aaKnown RBP eCLIP11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 TAF7Q15545 349 aaPredicted RBP11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 HACL1Q9UJ83 578 aa11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 GJA3Q9Y6H8 435 aa11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 UBN2Q6ZU65 1347 aa11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 SNED1Q8TER0 1413 aa11.5□□□□□ -0.57
SHKBP1-220ENST00000599716 SUSD4Q5VX71 490 aa11.49□□□□□ -0.57
SHKBP1-220ENST00000599716 PAXIP1Q6ZW49 1069 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-220ENST00000599716 ANXA1P04083 346 aa11.48□□□□□ -0.57
SHKBP1-220ENST00000599716 CASP8AP2Q9UKL3 1982 aa11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 MAP3K15Q6ZN16 1313 aa11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 FZD9O00144 591 aa11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 EIF4A1P60842 406 aaKnown RBP11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 GRM1Q13255 1194 aa11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 CYP4F22Q6NT55 531 aa11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 RTKN2Q8IZC4 609 aa11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 CNTROBQ8N137 903 aa11.47□□□□□ -0.57
SHKBP1-220ENST00000599716 TRAF5O00463 557 aa11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 HTATSF1O43719 755 aaKnown RBP11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 ALDH1B1P30837 517 aa11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 EPS15P42566 896 aa11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 BRPF1P55201 1214 aaPredicted RBP11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 PROSER3Q2NL68 480 aa11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 CRY2Q49AN0 593 aa11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 NECTIN2Q92692 538 aa11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 RPGRQ92834 1020 aaKnown RBP11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 PLEKHF1Q96S99 279 aa11.46□□□□□ -0.57
SHKBP1-220ENST00000599716 NTSR2O95665 410 aa11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 EIF2S2P20042 333 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 SCNN1DP51172 638 aa11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 KIF6Q6ZMV9 814 aa11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 PNMA8AQ86V59 439 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 GPC2Q8N158 579 aa11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 LARGE2Q8N3Y3 721 aa11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 JDP2Q8WYK2 163 aa11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 DDX21Q9NR30 783 aaKnown RBP eCLIP11.45□□□□□ -0.58
SHKBP1-220ENST00000599716 TAF1P21675 1872 aa11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 PPEF1O14829 653 aaPredicted RBP11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 EIF6P56537 245 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 NFE2L2Q16236 605 aa11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 AOC3Q16853 763 aa11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 PSMD1Q99460 953 aa11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 NYXQ9GZU5 481 aa11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 VCANP13611 3396 aa11.44□□□□□ -0.58
SHKBP1-220ENST00000599716 UNC80Q8N2C7 3258 aa11.43□□□□□ -0.58
SHKBP1-220ENST00000599716 ERVV-1B6SEH8 477 aa11.43□□□□□ -0.58
SHKBP1-220ENST00000599716 AOC2O75106 756 aa11.43□□□□□ -0.58
SHKBP1-220ENST00000599716 KRT24Q2M2I5 525 aa11.43□□□□□ -0.58
SHKBP1-220ENST00000599716 ZNF34Q8IZ26 560 aa11.43□□□□□ -0.58
SHKBP1-220ENST00000599716 LAMA3Q16787 3333 aa11.43□□□□□ -0.58
SHKBP1-220ENST00000599716 LAMB2P55268 1798 aa11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 PPIP5K2O43314 1243 aa11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 HOXA10P31260 410 aaPredicted RBP11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 AIMP1Q12904 312 aaKnown RBP11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 PDIA6Q15084 440 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms