RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ZNF541Q9H0D2 1346 aa15.56■□□□□ 0.08
SHKBP1-213ENST00000597325 KDM3BQ7LBC6 1761 aa15.55■□□□□ 0.08
SHKBP1-213ENST00000597325 ZNF853P0CG23 659 aa15.55■□□□□ 0.08
SHKBP1-213ENST00000597325 DUSP27Q5VZP5 1158 aa15.55■□□□□ 0.08
SHKBP1-213ENST00000597325 CST9Q5W186 159 aa15.55■□□□□ 0.08
SHKBP1-213ENST00000597325 PAXIP1Q6ZW49 1069 aaPredicted RBP15.55■□□□□ 0.08
SHKBP1-213ENST00000597325 MBIPQ9NS73 344 aa15.55■□□□□ 0.08
SHKBP1-213ENST00000597325 TLL2Q9Y6L7 1015 aa15.55■□□□□ 0.08
SHKBP1-213ENST00000597325 TRPM7Q96QT4 1865 aa15.54■□□□□ 0.08
SHKBP1-213ENST00000597325 BTBD11A6QL63 1104 aa15.54■□□□□ 0.08
SHKBP1-213ENST00000597325 CHL1O00533 1208 aa15.54■□□□□ 0.08
SHKBP1-213ENST00000597325 GRM1Q13255 1194 aa15.54■□□□□ 0.08
SHKBP1-213ENST00000597325 PDZRN3Q9UPQ7 1066 aa15.54■□□□□ 0.08
SHKBP1-213ENST00000597325 ARFGEF2Q9Y6D5 1785 aa15.54■□□□□ 0.08
SHKBP1-213ENST00000597325 RNF123Q5XPI4 1314 aa15.53■□□□□ 0.08
SHKBP1-213ENST00000597325 BRPF1P55201 1214 aaPredicted RBP15.53■□□□□ 0.08
SHKBP1-213ENST00000597325 TRMT2AQ8IZ69 625 aaKnown RBP15.53■□□□□ 0.08
SHKBP1-213ENST00000597325 NFATC2IPQ8NCF5 419 aa15.53■□□□□ 0.08
SHKBP1-213ENST00000597325 COL15A1P39059 1388 aa15.52■□□□□ 0.08
SHKBP1-213ENST00000597325 TTC5Q8N0Z6 440 aa15.52■□□□□ 0.08
SHKBP1-213ENST00000597325 BRIP1Q9BX63 1249 aa15.52■□□□□ 0.08
SHKBP1-213ENST00000597325 CACNA1SQ13698 1873 aa15.52■□□□□ 0.07
SHKBP1-213ENST00000597325 PDE6BP35913 854 aa15.51■□□□□ 0.07
SHKBP1-213ENST00000597325 MIS18AQ9NYP9 233 aa15.51■□□□□ 0.07
SHKBP1-213ENST00000597325 EXOSC9Q06265 439 aaKnown RBP15.5■□□□□ 0.07
SHKBP1-213ENST00000597325 SOGA3Q5TF21 947 aa15.5■□□□□ 0.07
SHKBP1-213ENST00000597325 PRPF40BQ6NWY9 871 aaKnown RBP15.5■□□□□ 0.07
SHKBP1-213ENST00000597325 C7orf43Q8WVR3 580 aa15.5■□□□□ 0.07
SHKBP1-213ENST00000597325 GCC1Q96CN9 775 aa15.5■□□□□ 0.07
SHKBP1-213ENST00000597325 FZD9O00144 591 aa15.49■□□□□ 0.07
SHKBP1-213ENST00000597325 HABP4Q5JVS0 413 aaKnown RBP15.49■□□□□ 0.07
SHKBP1-213ENST00000597325 SAPCD2Q86UD0 394 aa15.49■□□□□ 0.07
SHKBP1-213ENST00000597325 DNAJC10Q8IXB1 793 aa15.49■□□□□ 0.07
SHKBP1-213ENST00000597325 BRCA2P51587 3418 aa15.49■□□□□ 0.07
SHKBP1-213ENST00000597325 CENPFP49454 3210 aa15.49■□□□□ 0.07
SHKBP1-213ENST00000597325 CT47B1P0C2W7 299 aaPredicted RBP15.48■□□□□ 0.07
SHKBP1-213ENST00000597325 CYP19A1P11511 503 aaPredicted RBP15.48■□□□□ 0.07
SHKBP1-213ENST00000597325 PRR5LQ6MZQ0 368 aa15.48■□□□□ 0.07
SHKBP1-213ENST00000597325 ZNF790Q6PG37 636 aa15.48■□□□□ 0.07
SHKBP1-213ENST00000597325 CNKSR1Q969H4 720 aa15.48■□□□□ 0.07
SHKBP1-213ENST00000597325 HHIPL1Q96JK4 782 aa15.48■□□□□ 0.07
SHKBP1-213ENST00000597325 COL6A3P12111 3177 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 UBR2Q8IWV8 1755 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 TRAF5O00463 557 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 SLC39A6Q13433 755 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 CIAPIN1Q6FI81 312 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 STYK1Q6J9G0 422 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 GPC2Q8N158 579 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 ZBTB1Q9Y2K1 713 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 HTTP42858 3142 aa15.47■□□□□ 0.07
SHKBP1-213ENST00000597325 SRGNP10124 158 aa15.46■□□□□ 0.07
SHKBP1-213ENST00000597325 TWISTNBQ3B726 338 aaPredicted RBP15.46■□□□□ 0.07
SHKBP1-213ENST00000597325 CCDC24Q8N4L8 307 aa15.46■□□□□ 0.07
SHKBP1-213ENST00000597325 FMNL2Q96PY5 1086 aa15.46■□□□□ 0.07
SHKBP1-213ENST00000597325 EIF4A1P60842 406 aaKnown RBP15.45■□□□□ 0.06
SHKBP1-213ENST00000597325 FKBP4Q02790 459 aaKnown RBP eCLIP15.45■□□□□ 0.06
SHKBP1-213ENST00000597325 TBC1D9BQ66K14 1250 aa15.45■□□□□ 0.06
SHKBP1-213ENST00000597325 BICDL1Q6ZP65 573 aa15.45■□□□□ 0.06
SHKBP1-213ENST00000597325 ZNF277Q9NRM2 450 aaPredicted RBP15.45■□□□□ 0.06
SHKBP1-213ENST00000597325 RCAN3Q9UKA8 241 aa15.45■□□□□ 0.06
SHKBP1-213ENST00000597325 ELL2O00472 640 aaPredicted RBP15.44■□□□□ 0.06
SHKBP1-213ENST00000597325 KCNQ3O43525 872 aa15.44■□□□□ 0.06
SHKBP1-213ENST00000597325 C8orf58Q8NAV2 365 aa15.44■□□□□ 0.06
SHKBP1-213ENST00000597325 ZNF428Q96B54 188 aa15.44■□□□□ 0.06
SHKBP1-213ENST00000597325 ZIC5Q96T25 663 aa15.44■□□□□ 0.06
SHKBP1-213ENST00000597325 CHMP4AQ9BY43 222 aa15.44■□□□□ 0.06
SHKBP1-213ENST00000597325 LAMB4A4D0S4 1761 aa15.44■□□□□ 0.06
SHKBP1-213ENST00000597325 HOXB7P09629 217 aa15.43■□□□□ 0.06
SHKBP1-213ENST00000597325 KRT24Q2M2I5 525 aa15.43■□□□□ 0.06
SHKBP1-213ENST00000597325 CCDC93Q567U6 631 aa15.43■□□□□ 0.06
SHKBP1-213ENST00000597325 NBPF15Q8N660 670 aa15.43■□□□□ 0.06
SHKBP1-213ENST00000597325 TSPYL6Q8N831 410 aa15.43■□□□□ 0.06
SHKBP1-213ENST00000597325 MASTLQ96GX5 879 aa15.43■□□□□ 0.06
SHKBP1-213ENST00000597325 ZNF496Q96IT1 587 aaPredicted RBP15.43■□□□□ 0.06
SHKBP1-213ENST00000597325 BCORQ6W2J9 1755 aa15.42■□□□□ 0.06
SHKBP1-213ENST00000597325 SCN7AQ01118 1682 aa15.42■□□□□ 0.06
SHKBP1-213ENST00000597325 HEG1Q9ULI3 1381 aa15.42■□□□□ 0.06
SHKBP1-213ENST00000597325 SCNN1DP51172 638 aa15.42■□□□□ 0.06
SHKBP1-213ENST00000597325 SNRPA1P09661 255 aaKnown RBP15.41■□□□□ 0.06
SHKBP1-213ENST00000597325 EPS15P42566 896 aa15.41■□□□□ 0.06
SHKBP1-213ENST00000597325 FXR1P51114 621 aaKnown RBP eCLIP15.41■□□□□ 0.06
SHKBP1-213ENST00000597325 VAMP4O75379 141 aa15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 IARSP41252 1262 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 EIF5P55010 431 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 HDGFL1Q5TGJ6 251 aa15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 OLFM4Q6UX06 510 aa15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 USP50Q70EL3 339 aaPredicted RBP15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 SMC4Q9NTJ3 1288 aa15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 COL4A5P29400 1685 aa15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 SNED1Q8TER0 1413 aa15.4■□□□□ 0.06
SHKBP1-213ENST00000597325 CELF2O95319 508 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-213ENST00000597325 RARSP54136 660 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-213ENST00000597325 NOGQ13253 232 aa15.39■□□□□ 0.05
SHKBP1-213ENST00000597325 ALDH1L2Q3SY69 923 aa15.39■□□□□ 0.05
SHKBP1-213ENST00000597325 CCDC30Q5VVM6 783 aa15.39■□□□□ 0.05
SHKBP1-213ENST00000597325 STK31Q9BXU1 1019 aa15.39■□□□□ 0.05
SHKBP1-213ENST00000597325 SAGE1Q9NXZ1 904 aa15.39■□□□□ 0.05
SHKBP1-213ENST00000597325 VSIG10Q8N0Z9 540 aa15.38■□□□□ 0.05
SHKBP1-213ENST00000597325 EIF2S2P20042 333 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 CANXP27824 592 aaKnown RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms