RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 PXDNLA1KZ92 1463 aa18.24■□□□□ 0.51
VRK3-213ENST00000597215 IGKV5-2P06315 115 aa18.23■□□□□ 0.51
VRK3-213ENST00000597215 SLC4A10Q6U841 1118 aa18.23■□□□□ 0.51
VRK3-213ENST00000597215 LINS1Q8NG48 757 aa18.23■□□□□ 0.51
VRK3-213ENST00000597215 FHDC1Q9C0D6 1143 aaPredicted RBP18.23■□□□□ 0.51
VRK3-213ENST00000597215 CWC25Q9NXE8 425 aaPredicted RBP18.23■□□□□ 0.51
VRK3-213ENST00000597215 NEURL1BA8MQ27 555 aa18.22■□□□□ 0.51
VRK3-213ENST00000597215 FRAT1Q92837 279 aaPredicted RBP18.22■□□□□ 0.51
VRK3-213ENST00000597215 TRMT112Q9UI30 125 aaKnown RBP18.22■□□□□ 0.51
VRK3-213ENST00000597215 ANKRD31Q8N7Z5 1873 aa18.21■□□□□ 0.51
VRK3-213ENST00000597215 CWF19L2Q2TBE0 894 aaKnown RBP18.21■□□□□ 0.51
VRK3-213ENST00000597215 BEND3Q5T5X7 828 aa18.21■□□□□ 0.51
VRK3-213ENST00000597215 NUTM1Q86Y26 1132 aa18.21■□□□□ 0.51
VRK3-213ENST00000597215 N4BP2Q86UW6 1770 aaPredicted RBP18.21■□□□□ 0.51
VRK3-213ENST00000597215 SH3TC1Q8TE82 1336 aa18.21■□□□□ 0.51
VRK3-213ENST00000597215 ABCC12Q96J65 1359 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 ERFEQ4G0M1 354 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 ZKSCAN2Q63HK3 967 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 ATF7IPQ6VMQ6 1270 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 CCDC24Q8N4L8 307 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 BRIP1Q9BX63 1249 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 SRCIN1Q9C0H9 1055 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 RIC1Q4ADV7 1423 aa18.2■□□□□ 0.5
VRK3-213ENST00000597215 ALDH1L1O75891 902 aa18.19■□□□□ 0.5
VRK3-213ENST00000597215 ZBTB38Q8NAP3 1195 aaPredicted RBP18.19■□□□□ 0.5
VRK3-213ENST00000597215 SYT17Q9BSW7 474 aa18.19■□□□□ 0.5
VRK3-213ENST00000597215 PCCAP05165 728 aaPredicted RBP18.18■□□□□ 0.5
VRK3-213ENST00000597215 TRIM27P14373 513 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 PDE6BP35913 854 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 TGFB2P61812 414 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 GCKRQ14397 625 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 FAM89AQ96GI7 184 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 PDZRN3Q9UPQ7 1066 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 ABCC4O15439 1325 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 KIAA1551Q9HCM1 1747 aa18.18■□□□□ 0.5
VRK3-213ENST00000597215 LAMB2P55268 1798 aa18.17■□□□□ 0.5
VRK3-213ENST00000597215 HSP90B1P14625 803 aaKnown RBP18.17■□□□□ 0.5
VRK3-213ENST00000597215 CCT4P50991 539 aaKnown RBP18.17■□□□□ 0.5
VRK3-213ENST00000597215 TNRC6CQ9HCJ0 1690 aaKnown RBP18.16■□□□□ 0.5
VRK3-213ENST00000597215 DDX60Q8IY21 1712 aaKnown RBP18.16■□□□□ 0.5
VRK3-213ENST00000597215 SLC10A5Q5PT55 438 aa18.16■□□□□ 0.5
VRK3-213ENST00000597215 NLGN2Q8NFZ4 835 aa18.16■□□□□ 0.5
VRK3-213ENST00000597215 COL11A2P13942 1736 aaPredicted RBP18.15■□□□□ 0.5
VRK3-213ENST00000597215 DLEC1Q9Y238 1755 aa18.15■□□□□ 0.5
VRK3-213ENST00000597215 IRS4O14654 1257 aaPredicted RBP18.15■□□□□ 0.5
VRK3-213ENST00000597215 RTL5Q5HYW3 569 aaPredicted RBP18.15■□□□□ 0.5
VRK3-213ENST00000597215 FTSJ3Q8IY81 847 aaKnown RBP18.15■□□□□ 0.5
VRK3-213ENST00000597215 SYNE4Q8N205 404 aa18.15■□□□□ 0.5
VRK3-213ENST00000597215 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.15■□□□□ 0.5
VRK3-213ENST00000597215 CDHR2Q9BYE9 1310 aa18.15■□□□□ 0.5
VRK3-213ENST00000597215 H0YIN7 160 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 H7C1W4 665 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 GRM8O00222 908 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 HCLS1P14317 486 aaPredicted RBP18.14■□□□□ 0.49
VRK3-213ENST00000597215 UBE3BQ7Z3V4 1068 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 C2CD5Q86YS7 1000 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 CLUAP1Q96AJ1 413 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 NLRP3Q96P20 1036 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 C9orf78Q9NZ63 289 aaPredicted RBP18.14■□□□□ 0.49
VRK3-213ENST00000597215 TNNQ9UQP3 1299 aa18.14■□□□□ 0.49
VRK3-213ENST00000597215 A0A0G2JLW4 131 aa18.13■□□□□ 0.49
VRK3-213ENST00000597215 KLRG2A4D1S0 409 aaPredicted RBP18.13■□□□□ 0.49
VRK3-213ENST00000597215 MS4A1P11836 297 aa18.13■□□□□ 0.49
VRK3-213ENST00000597215 DPEP1P16444 411 aa18.13■□□□□ 0.49
VRK3-213ENST00000597215 CHRNA5P30532 468 aa18.13■□□□□ 0.49
VRK3-213ENST00000597215 INTS3Q68E01 1043 aaKnown RBP18.13■□□□□ 0.49
VRK3-213ENST00000597215 DZIP1LQ8IYY4 767 aaKnown RBP18.13■□□□□ 0.49
VRK3-213ENST00000597215 JARID2Q92833 1246 aaPredicted RBP18.13■□□□□ 0.49
VRK3-213ENST00000597215 BRCA1P38398 1863 aaKnown RBP18.12■□□□□ 0.49
VRK3-213ENST00000597215 MYH3P11055 1940 aa18.11■□□□□ 0.49
VRK3-213ENST00000597215 PDE8AO60658 829 aa18.11■□□□□ 0.49
VRK3-213ENST00000597215 SRGNP10124 158 aa18.11■□□□□ 0.49
VRK3-213ENST00000597215 CASP7P55210 303 aa18.11■□□□□ 0.49
VRK3-213ENST00000597215 CRY2Q49AN0 593 aa18.11■□□□□ 0.49
VRK3-213ENST00000597215 MASTLQ96GX5 879 aa18.11■□□□□ 0.49
VRK3-213ENST00000597215 UTYO14607 1347 aa18.1■□□□□ 0.49
VRK3-213ENST00000597215 NPR1P16066 1061 aa18.1■□□□□ 0.49
VRK3-213ENST00000597215 KCNA3P22001 575 aa18.1■□□□□ 0.49
VRK3-213ENST00000597215 STYK1Q6J9G0 422 aa18.1■□□□□ 0.49
VRK3-213ENST00000597215 C3orf67Q6ZVT6 689 aa18.1■□□□□ 0.49
VRK3-213ENST00000597215 RPGRQ92834 1020 aaKnown RBP18.1■□□□□ 0.49
VRK3-213ENST00000597215 PLIN1O60240 522 aa18.09■□□□□ 0.49
VRK3-213ENST00000597215 TMEM57Q8N5G2 664 aa18.09■□□□□ 0.49
VRK3-213ENST00000597215 ZNF622Q969S3 477 aaKnown RBP eCLIP18.09■□□□□ 0.49
VRK3-213ENST00000597215 PLA2G12BQ9BX93 195 aa18.09■□□□□ 0.49
VRK3-213ENST00000597215 PIM2Q9P1W9 311 aa18.09■□□□□ 0.49
VRK3-213ENST00000597215 RLBP1P12271 317 aa18.08■□□□□ 0.48
VRK3-213ENST00000597215 CTSWP56202 376 aa18.08■□□□□ 0.48
VRK3-213ENST00000597215 SF3B3Q15393 1217 aaKnown RBP18.08■□□□□ 0.48
VRK3-213ENST00000597215 CNKSR1Q969H4 720 aa18.08■□□□□ 0.48
VRK3-213ENST00000597215 USP44Q9H0E7 712 aa18.08■□□□□ 0.48
VRK3-213ENST00000597215 NBPF7P0C2Y1 421 aaPredicted RBP18.07■□□□□ 0.48
VRK3-213ENST00000597215 HOXA10P31260 410 aaPredicted RBP18.07■□□□□ 0.48
VRK3-213ENST00000597215 RRP1P56182 461 aaKnown RBP18.07■□□□□ 0.48
VRK3-213ENST00000597215 CCDC152Q4G0S7 254 aa18.07■□□□□ 0.48
VRK3-213ENST00000597215 ITPRIPQ8IWB1 547 aa18.07■□□□□ 0.48
VRK3-213ENST00000597215 TTLL6Q8N841 843 aa18.07■□□□□ 0.48
VRK3-213ENST00000597215 PANK1Q8TE04 598 aa18.07■□□□□ 0.48
VRK3-213ENST00000597215 RBM17Q96I25 401 aaKnown RBP18.07■□□□□ 0.48
VRK3-213ENST00000597215 CACNA1SQ13698 1873 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms