RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MASTLQ96GX5 879 aa19.57■□□□□ 0.72
TRIM28-205ENST00000595028 TIAM2Q8IVF5 1701 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 NTSR2O95665 410 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 VEGFAP15692 232 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-205ENST00000595028 GTF2E1P29083 439 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-205ENST00000595028 PARP10Q53GL7 1025 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 HSP90AB3PQ58FF7 597 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 SUSD4Q5VX71 490 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 NUTM1Q86Y26 1132 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 C8orf58Q8NAV2 365 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 TSR2Q969E8 191 aaKnown RBP19.56■□□□□ 0.72
TRIM28-205ENST00000595028 CNKSR1Q969H4 720 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 CCDC88AQ3V6T2 1871 aa19.56■□□□□ 0.72
TRIM28-205ENST00000595028 ZC3H4Q9UPT8 1303 aaKnown RBP19.55■□□□□ 0.72
TRIM28-205ENST00000595028 NPR1P16066 1061 aa19.55■□□□□ 0.72
TRIM28-205ENST00000595028 RASSF7Q02833 373 aa19.55■□□□□ 0.72
TRIM28-205ENST00000595028 ERFEQ4G0M1 354 aa19.55■□□□□ 0.72
TRIM28-205ENST00000595028 PRPF40BQ6NWY9 871 aaKnown RBP19.55■□□□□ 0.72
TRIM28-205ENST00000595028 FAM9BQ8IZU0 186 aa19.55■□□□□ 0.72
TRIM28-205ENST00000595028 HYPKQ9NX55 129 aa19.55■□□□□ 0.72
TRIM28-205ENST00000595028 GLTPD2A6NH11 291 aa19.54■□□□□ 0.72
TRIM28-205ENST00000595028 ELL2O00472 640 aaPredicted RBP19.54■□□□□ 0.72
TRIM28-205ENST00000595028 LAMB2P55268 1798 aa19.53■□□□□ 0.72
TRIM28-205ENST00000595028 NFKBIEO00221 500 aa19.53■□□□□ 0.72
TRIM28-205ENST00000595028 PPP1R42Q7Z4L9 355 aa19.53■□□□□ 0.72
TRIM28-205ENST00000595028 PLBD2Q8NHP8 589 aa19.53■□□□□ 0.72
TRIM28-205ENST00000595028 RNF123Q5XPI4 1314 aa19.52■□□□□ 0.72
TRIM28-205ENST00000595028 C21orf2O43822 256 aa19.52■□□□□ 0.72
TRIM28-205ENST00000595028 CRY2Q49AN0 593 aa19.52■□□□□ 0.72
TRIM28-205ENST00000595028 DICER1Q9UPY3 1922 aaKnown RBP19.52■□□□□ 0.72
TRIM28-205ENST00000595028 FANCIQ9NVI1 1328 aa19.51■□□□□ 0.71
TRIM28-205ENST00000595028 TCIRG1Q13488 830 aa19.51■□□□□ 0.71
TRIM28-205ENST00000595028 NLRP10Q86W26 655 aa19.51■□□□□ 0.71
TRIM28-205ENST00000595028 TSPYL6Q8N831 410 aa19.51■□□□□ 0.71
TRIM28-205ENST00000595028 UTP14AQ9BVJ6 771 aaKnown RBP19.51■□□□□ 0.71
TRIM28-205ENST00000595028 ZNF219Q9P2Y4 722 aaPredicted RBP19.51■□□□□ 0.71
TRIM28-205ENST00000595028 SALL2Q9Y467 1007 aaPredicted RBP19.51■□□□□ 0.71
TRIM28-205ENST00000595028 FOXN1O15353 648 aa19.5■□□□□ 0.71
TRIM28-205ENST00000595028 LMNB1P20700 586 aa19.5■□□□□ 0.71
TRIM28-205ENST00000595028 SOGA3Q5TF21 947 aa19.5■□□□□ 0.71
TRIM28-205ENST00000595028 ANKRD13DQ6ZTN6 518 aa19.5■□□□□ 0.71
TRIM28-205ENST00000595028 WDR63Q8IWG1 891 aa19.5■□□□□ 0.71
TRIM28-205ENST00000595028 CHMP4AQ9BY43 222 aa19.5■□□□□ 0.71
TRIM28-205ENST00000595028 DDX60Q8IY21 1712 aaKnown RBP19.5■□□□□ 0.71
TRIM28-205ENST00000595028 CCDC30Q5VVM6 783 aa19.49■□□□□ 0.71
TRIM28-205ENST00000595028 MKRN1Q9UHC7 482 aaKnown RBP19.49■□□□□ 0.71
TRIM28-205ENST00000595028 LTBP3Q9NS15 1303 aa19.49■□□□□ 0.71
TRIM28-205ENST00000595028 POTECB2RU33 542 aa19.48■□□□□ 0.71
TRIM28-205ENST00000595028 GOLGA2Q08379 1002 aa19.48■□□□□ 0.71
TRIM28-205ENST00000595028 TAOK3Q9H2K8 898 aa19.48■□□□□ 0.71
TRIM28-205ENST00000595028 PHAXQ9H814 394 aaKnown RBP19.48■□□□□ 0.71
TRIM28-205ENST00000595028 CACNA1FO60840 1977 aa19.48■□□□□ 0.71
TRIM28-205ENST00000595028 ALDH1B1P30837 517 aa19.47■□□□□ 0.71
TRIM28-205ENST00000595028 TWISTNBQ3B726 338 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-205ENST00000595028 C3orf67Q6ZVT6 689 aa19.47■□□□□ 0.71
TRIM28-205ENST00000595028 C7orf43Q8WVR3 580 aa19.47■□□□□ 0.71
TRIM28-205ENST00000595028 RPGRQ92834 1020 aaKnown RBP19.47■□□□□ 0.71
TRIM28-205ENST00000595028 ISCA1Q9BUE6 129 aa19.47■□□□□ 0.71
TRIM28-205ENST00000595028 PRDM10Q9NQV6 1147 aa19.47■□□□□ 0.71
TRIM28-205ENST00000595028 CREBZFQ9NS37 354 aa19.47■□□□□ 0.71
TRIM28-205ENST00000595028 HOXA10P31260 410 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-205ENST00000595028 CCDC93Q567U6 631 aa19.46■□□□□ 0.71
TRIM28-205ENST00000595028 SLC10A5Q5PT55 438 aa19.46■□□□□ 0.71
TRIM28-205ENST00000595028 TRMT112Q9UI30 125 aaKnown RBP19.46■□□□□ 0.71
TRIM28-205ENST00000595028 SH3TC1Q8TE82 1336 aa19.46■□□□□ 0.71
TRIM28-205ENST00000595028 SNED1Q8TER0 1413 aa19.45■□□□□ 0.7
TRIM28-205ENST00000595028 ATP5J2-PTCD1G3V325 749 aa19.44■□□□□ 0.7
TRIM28-205ENST00000595028 RIC3Q7Z5B4 369 aa19.44■□□□□ 0.7
TRIM28-205ENST00000595028 NLRP3Q96P20 1036 aa19.44■□□□□ 0.7
TRIM28-205ENST00000595028 STK31Q9BXU1 1019 aa19.44■□□□□ 0.7
TRIM28-205ENST00000595028 OLFM4Q6UX06 510 aa19.43■□□□□ 0.7
TRIM28-205ENST00000595028 SYNE4Q8N205 404 aa19.43■□□□□ 0.7
TRIM28-205ENST00000595028 RBM17Q96I25 401 aaKnown RBP19.43■□□□□ 0.7
TRIM28-205ENST00000595028 CRAMP1Q96RY5 1269 aa19.43■□□□□ 0.7
TRIM28-205ENST00000595028 SPINK5Q9NQ38 1064 aaPredicted RBP19.43■□□□□ 0.7
TRIM28-205ENST00000595028 ZNF521Q96K83 1311 aa19.43■□□□□ 0.7
TRIM28-205ENST00000595028 CCER2I3L3R5 266 aa19.42■□□□□ 0.7
TRIM28-205ENST00000595028 DDX58O95786 925 aaKnown RBP19.42■□□□□ 0.7
TRIM28-205ENST00000595028 HCLS1P14317 486 aaPredicted RBP19.42■□□□□ 0.7
TRIM28-205ENST00000595028 TRIM28Q13263 835 aaKnown RBP19.42■□□□□ 0.7
TRIM28-205ENST00000595028 FAM161AQ3B820 660 aa19.42■□□□□ 0.7
TRIM28-205ENST00000595028 MYH16Q9H6N6 1097 aa19.42■□□□□ 0.7
TRIM28-205ENST00000595028 TCERG1O14776 1098 aaKnown RBP19.41■□□□□ 0.7
TRIM28-205ENST00000595028 CTCFP49711 727 aaPredicted RBP19.41■□□□□ 0.7
TRIM28-205ENST00000595028 EXOSC9Q06265 439 aaKnown RBP19.41■□□□□ 0.7
TRIM28-205ENST00000595028 CHADLQ6NUI6 762 aa19.41■□□□□ 0.7
TRIM28-205ENST00000595028 ZNF428Q96B54 188 aa19.41■□□□□ 0.7
TRIM28-205ENST00000595028 ABCC4O15439 1325 aa19.41■□□□□ 0.7
TRIM28-205ENST00000595028 CNTNAP1P78357 1384 aa19.41■□□□□ 0.7
TRIM28-205ENST00000595028 PPEF1O14829 653 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-205ENST00000595028 FKBP4Q02790 459 aaKnown RBP eCLIP19.4■□□□□ 0.7
TRIM28-205ENST00000595028 DPY19L2Q6NUT2 758 aa19.4■□□□□ 0.7
TRIM28-205ENST00000595028 RTKN2Q8IZC4 609 aa19.4■□□□□ 0.7
TRIM28-205ENST00000595028 MYD88Q99836 296 aa19.4■□□□□ 0.7
TRIM28-205ENST00000595028 TAF1P21675 1872 aa19.39■□□□□ 0.7
TRIM28-205ENST00000595028 CC2D2BQ6DHV5 1058 aa19.39■□□□□ 0.69
TRIM28-205ENST00000595028 AIDAQ96BJ3 306 aa19.39■□□□□ 0.69
TRIM28-205ENST00000595028 FAM89AQ96GI7 184 aa19.39■□□□□ 0.69
TRIM28-205ENST00000595028 METTL22Q9BUU2 404 aaPredicted RBP19.39■□□□□ 0.69
TRIM28-205ENST00000595028 MAP3K2Q9Y2U5 619 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms