RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 SLC10A5Q5PT55 438 aa23.89■■□□□ 1.41
SHKBP1-202ENST00000593764 CCDC30Q5VVM6 783 aa23.89■■□□□ 1.41
SHKBP1-202ENST00000593764 RNF181Q9P0P0 153 aa23.89■■□□□ 1.41
SHKBP1-202ENST00000593764 C3orf67Q6ZVT6 689 aa23.88■■□□□ 1.41
SHKBP1-202ENST00000593764 GPBP1L1Q9HC44 474 aaPredicted RBP23.88■■□□□ 1.41
SHKBP1-202ENST00000593764 SPINK5Q9NQ38 1064 aaPredicted RBP23.88■■□□□ 1.41
SHKBP1-202ENST00000593764 SYNE4Q8N205 404 aa23.87■■□□□ 1.41
SHKBP1-202ENST00000593764 ISCA1Q9BUE6 129 aa23.87■■□□□ 1.41
SHKBP1-202ENST00000593764 CHMP4AQ9BY43 222 aa23.87■■□□□ 1.41
SHKBP1-202ENST00000593764 ANKRD36CQ5JPF3 1778 aa23.87■■□□□ 1.41
SHKBP1-202ENST00000593764 FANCIQ9NVI1 1328 aa23.86■■□□□ 1.41
SHKBP1-202ENST00000593764 ARFGEF2Q9Y6D5 1785 aa23.86■■□□□ 1.41
SHKBP1-202ENST00000593764 LMNB1P20700 586 aa23.86■■□□□ 1.41
SHKBP1-202ENST00000593764 HOXA10P31260 410 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-202ENST00000593764 TWISTNBQ3B726 338 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-202ENST00000593764 RNF123Q5XPI4 1314 aa23.85■■□□□ 1.41
SHKBP1-202ENST00000593764 CACNA1SQ13698 1873 aa23.85■■□□□ 1.41
SHKBP1-202ENST00000593764 ALDH1B1P30837 517 aa23.85■■□□□ 1.41
SHKBP1-202ENST00000593764 FER1L6Q2WGJ9 1857 aa23.85■■□□□ 1.41
SHKBP1-202ENST00000593764 ATP5J2-PTCD1G3V325 749 aa23.84■■□□□ 1.41
SHKBP1-202ENST00000593764 TRMT112Q9UI30 125 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-202ENST00000593764 LTBP3Q9NS15 1303 aa23.84■■□□□ 1.41
SHKBP1-202ENST00000593764 TCERG1O14776 1098 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-202ENST00000593764 TRIM28Q13263 835 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-202ENST00000593764 SOGA3Q5TF21 947 aa23.83■■□□□ 1.41
SHKBP1-202ENST00000593764 OLFM4Q6UX06 510 aa23.83■■□□□ 1.41
SHKBP1-202ENST00000593764 RIC3Q7Z5B4 369 aa23.83■■□□□ 1.41
SHKBP1-202ENST00000593764 ZNF428Q96B54 188 aa23.83■■□□□ 1.41
SHKBP1-202ENST00000593764 NLRP3Q96P20 1036 aa23.83■■□□□ 1.41
SHKBP1-202ENST00000593764 ZNF521Q96K83 1311 aa23.83■■□□□ 1.4
SHKBP1-202ENST00000593764 HCLS1P14317 486 aaPredicted RBP23.82■■□□□ 1.4
SHKBP1-202ENST00000593764 GOLGA2Q08379 1002 aa23.82■■□□□ 1.4
SHKBP1-202ENST00000593764 RPGRQ92834 1020 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-202ENST00000593764 SH3TC1Q8TE82 1336 aa23.82■■□□□ 1.4
SHKBP1-202ENST00000593764 CCER2I3L3R5 266 aa23.81■■□□□ 1.4
SHKBP1-202ENST00000593764 VAMP4O75379 141 aa23.81■■□□□ 1.4
SHKBP1-202ENST00000593764 C1QTNF8P60827 252 aa23.81■■□□□ 1.4
SHKBP1-202ENST00000593764 CRAMP1Q96RY5 1269 aa23.81■■□□□ 1.4
SHKBP1-202ENST00000593764 CCDC88AQ3V6T2 1871 aa23.81■■□□□ 1.4
SHKBP1-202ENST00000593764 EXOSC9Q06265 439 aaKnown RBP23.8■■□□□ 1.4
SHKBP1-202ENST00000593764 CCDC93Q567U6 631 aa23.8■■□□□ 1.4
SHKBP1-202ENST00000593764 TAOK3Q9H2K8 898 aa23.8■■□□□ 1.4
SHKBP1-202ENST00000593764 KIF3CO14782 793 aa23.79■■□□□ 1.4
SHKBP1-202ENST00000593764 FAM89AQ96GI7 184 aa23.79■■□□□ 1.4
SHKBP1-202ENST00000593764 RBM17Q96I25 401 aaKnown RBP23.79■■□□□ 1.4
SHKBP1-202ENST00000593764 STK31Q9BXU1 1019 aa23.79■■□□□ 1.4
SHKBP1-202ENST00000593764 ZC3H4Q9UPT8 1303 aaKnown RBP23.79■■□□□ 1.4
SHKBP1-202ENST00000593764 SLC4A2P04920 1241 aa23.78■■□□□ 1.4
SHKBP1-202ENST00000593764 G2E3Q7L622 706 aa23.78■■□□□ 1.4
SHKBP1-202ENST00000593764 SNED1Q8TER0 1413 aa23.77■■□□□ 1.4
SHKBP1-202ENST00000593764 DDX58O95786 925 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-202ENST00000593764 MYD88Q99836 296 aa23.77■■□□□ 1.4
SHKBP1-202ENST00000593764 METTL22Q9BUU2 404 aaPredicted RBP23.77■■□□□ 1.4
SHKBP1-202ENST00000593764 MYH16Q9H6N6 1097 aa23.77■■□□□ 1.4
SHKBP1-202ENST00000593764 NMRK2Q9NPI5 230 aa23.77■■□□□ 1.4
SHKBP1-202ENST00000593764 PI4KAP2A4QPH2 592 aa23.76■■□□□ 1.39
SHKBP1-202ENST00000593764 KSR2Q6VAB6 950 aa23.76■■□□□ 1.39
SHKBP1-202ENST00000593764 SLC51AQ86UW1 340 aa23.76■■□□□ 1.39
SHKBP1-202ENST00000593764 RTKN2Q8IZC4 609 aa23.76■■□□□ 1.39
SHKBP1-202ENST00000593764 PI4KAP1Q8N8J0 262 aa23.76■■□□□ 1.39
SHKBP1-202ENST00000593764 MAP3K2Q9Y2U5 619 aa23.76■■□□□ 1.39
SHKBP1-202ENST00000593764 FKBP4Q02790 459 aaKnown RBP eCLIP23.75■■□□□ 1.39
SHKBP1-202ENST00000593764 LAMB2P55268 1798 aa23.74■■□□□ 1.39
SHKBP1-202ENST00000593764 RTL5Q5HYW3 569 aaPredicted RBP23.74■■□□□ 1.39
SHKBP1-202ENST00000593764 CCDC191Q8NCU4 936 aa23.74■■□□□ 1.39
SHKBP1-202ENST00000593764 ABCC4O15439 1325 aa23.74■■□□□ 1.39
SHKBP1-202ENST00000593764 DICER1Q9UPY3 1922 aaKnown RBP23.73■■□□□ 1.39
SHKBP1-202ENST00000593764 GLTPD2A6NH11 291 aa23.73■■□□□ 1.39
SHKBP1-202ENST00000593764 CC2D2BQ6DHV5 1058 aa23.73■■□□□ 1.39
SHKBP1-202ENST00000593764 ZBTB38Q8NAP3 1195 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-202ENST00000593764 KDM2BQ8NHM5 1336 aa23.73■■□□□ 1.39
SHKBP1-202ENST00000593764 PPEF1O14829 653 aaPredicted RBP23.72■■□□□ 1.39
SHKBP1-202ENST00000593764 IGKV5-2P06315 115 aa23.72■■□□□ 1.39
SHKBP1-202ENST00000593764 ZNF277Q9NRM2 450 aaPredicted RBP23.72■■□□□ 1.39
SHKBP1-202ENST00000593764 DDX60Q8IY21 1712 aaKnown RBP23.72■■□□□ 1.39
SHKBP1-202ENST00000593764 IRS4O14654 1257 aaPredicted RBP23.71■■□□□ 1.39
SHKBP1-202ENST00000593764 FLIIQ13045 1269 aa23.71■■□□□ 1.39
SHKBP1-202ENST00000593764 SF3B3Q15393 1217 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-202ENST00000593764 PSMD1Q99460 953 aa23.71■■□□□ 1.39
SHKBP1-202ENST00000593764 CWC25Q9NXE8 425 aaPredicted RBP23.71■■□□□ 1.39
SHKBP1-202ENST00000593764 TIAM2Q8IVF5 1701 aa23.7■■□□□ 1.39
SHKBP1-202ENST00000593764 BBOX1O75936 387 aa23.7■■□□□ 1.38
SHKBP1-202ENST00000593764 DDX46Q7L014 1031 aaKnown RBP23.7■■□□□ 1.38
SHKBP1-202ENST00000593764 RRAGCQ9HB90 399 aa23.7■■□□□ 1.38
SHKBP1-202ENST00000593764 ATP6V0A2Q9Y487 856 aa23.7■■□□□ 1.38
SHKBP1-202ENST00000593764 PCCAP05165 728 aaPredicted RBP23.69■■□□□ 1.38
SHKBP1-202ENST00000593764 JARID2Q92833 1246 aaPredicted RBP23.69■■□□□ 1.38
SHKBP1-202ENST00000593764 CACNA1FO60840 1977 aa23.69■■□□□ 1.38
SHKBP1-202ENST00000593764 GRAPQ13588 217 aa23.68■■□□□ 1.38
SHKBP1-202ENST00000593764 GRIPAP1Q4V328 841 aa23.68■■□□□ 1.38
SHKBP1-202ENST00000593764 DIEXFQ68CQ4 756 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-202ENST00000593764 GRAPLQ8TC17 118 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-202ENST00000593764 TAF1P21675 1872 aa23.67■■□□□ 1.38
SHKBP1-202ENST00000593764 IARSP41252 1262 aaKnown RBP23.67■■□□□ 1.38
SHKBP1-202ENST00000593764 NEURL1BA8MQ27 555 aa23.66■■□□□ 1.38
SHKBP1-202ENST00000593764 POTECB2RU33 542 aa23.66■■□□□ 1.38
SHKBP1-202ENST00000593764 E9PSI1 815 aa23.66■■□□□ 1.38
SHKBP1-202ENST00000593764 TOMM70O94826 608 aa23.66■■□□□ 1.38
SHKBP1-202ENST00000593764 SLFN5Q08AF3 891 aa23.66■■□□□ 1.38
SHKBP1-202ENST00000593764 FKBP5Q13451 457 aaPredicted RBP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms