RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PTMSP20962 102 aa23.87■■□□□ 1.41
CLIP3-206ENST00000593074 TOM1O60784 492 aa23.87■■□□□ 1.41
CLIP3-206ENST00000593074 RUFY2Q8WXA3 655 aa23.87■■□□□ 1.41
CLIP3-206ENST00000593074 JARID2Q92833 1246 aaPredicted RBP23.87■■□□□ 1.41
CLIP3-206ENST00000593074 DIAPH3Q9NSV4 1193 aa23.87■■□□□ 1.41
CLIP3-206ENST00000593074 PTPN12Q05209 780 aaKnown RBP23.86■■□□□ 1.41
CLIP3-206ENST00000593074 CWC27Q6UX04 472 aaKnown RBP23.86■■□□□ 1.41
CLIP3-206ENST00000593074 TMX3Q96JJ7 454 aa23.86■■□□□ 1.41
CLIP3-206ENST00000593074 CDCA7Q9BWT1 371 aaPredicted RBP23.86■■□□□ 1.41
CLIP3-206ENST00000593074 PLCH1Q4KWH8 1693 aa23.85■■□□□ 1.41
CLIP3-206ENST00000593074 ZGPATQ8N5A5 531 aaKnown RBP23.85■■□□□ 1.41
CLIP3-206ENST00000593074 TLR7Q9NYK1 1049 aaKnown RBP23.85■■□□□ 1.41
CLIP3-206ENST00000593074 PHLPP1O60346 1717 aa23.84■■□□□ 1.41
CLIP3-206ENST00000593074 H7C1W4 665 aa23.84■■□□□ 1.41
CLIP3-206ENST00000593074 CUL4AQ13619 759 aa23.84■■□□□ 1.41
CLIP3-206ENST00000593074 CCDC8Q9H0W5 538 aaPredicted RBP23.84■■□□□ 1.41
CLIP3-206ENST00000593074 PIP4K2BP78356 416 aa23.83■■□□□ 1.41
CLIP3-206ENST00000593074 KIAA1211Q6ZU35 1233 aa23.83■■□□□ 1.41
CLIP3-206ENST00000593074 DNAJC10Q8IXB1 793 aa23.83■■□□□ 1.41
CLIP3-206ENST00000593074 ZBTB3Q9H5J0 574 aa23.83■■□□□ 1.41
CLIP3-206ENST00000593074 CWC25Q9NXE8 425 aaPredicted RBP23.83■■□□□ 1.41
CLIP3-206ENST00000593074 STARD3NLO95772 234 aa23.83■■□□□ 1.41
CLIP3-206ENST00000593074 THRAP3Q9Y2W1 955 aaKnown RBP23.83■■□□□ 1.41
CLIP3-206ENST00000593074 NUTM2BA6NNL0 878 aaPredicted RBP23.82■■□□□ 1.4
CLIP3-206ENST00000593074 NUTM2EB1AL46 878 aaPredicted RBP23.82■■□□□ 1.4
CLIP3-206ENST00000593074 BCL9O00512 1426 aa23.82■■□□□ 1.4
CLIP3-206ENST00000593074 SPATA31A1Q5TZJ5 1347 aa23.82■■□□□ 1.4
CLIP3-206ENST00000593074 NUTM2AQ8IVF1 878 aaPredicted RBP23.82■■□□□ 1.4
CLIP3-206ENST00000593074 SNX14Q9Y5W7 946 aa23.82■■□□□ 1.4
CLIP3-206ENST00000593074 LRP6O75581 1613 aa23.81■■□□□ 1.4
CLIP3-206ENST00000593074 HIP1O00291 1037 aa23.81■■□□□ 1.4
CLIP3-206ENST00000593074 BAG4O95429 457 aaKnown RBP23.81■■□□□ 1.4
CLIP3-206ENST00000593074 CCDC191Q8NCU4 936 aa23.81■■□□□ 1.4
CLIP3-206ENST00000593074 UPF3BQ9BZI7 483 aaKnown RBP23.81■■□□□ 1.4
CLIP3-206ENST00000593074 FOXO4P98177 505 aa23.8■■□□□ 1.4
CLIP3-206ENST00000593074 ITGB4P16144 1822 aa23.8■■□□□ 1.4
CLIP3-206ENST00000593074 PKP1Q13835 747 aa23.8■■□□□ 1.4
CLIP3-206ENST00000593074 INTS4Q96HW7 963 aaKnown RBP23.8■■□□□ 1.4
CLIP3-206ENST00000593074 SNRKQ9NRH2 765 aa23.8■■□□□ 1.4
CLIP3-206ENST00000593074 SKOR2Q2VWA4 1001 aaPredicted RBP23.79■■□□□ 1.4
CLIP3-206ENST00000593074 TNNI3KQ59H18 835 aa23.79■■□□□ 1.4
CLIP3-206ENST00000593074 SYTL4Q96C24 671 aaPredicted RBP23.79■■□□□ 1.4
CLIP3-206ENST00000593074 FPGT-TNNI3KV9GXZ4 949 aa23.79■■□□□ 1.4
CLIP3-206ENST00000593074 LMBR1LQ6UX01 489 aa23.79■■□□□ 1.4
CLIP3-206ENST00000593074 GOLGA6L22H0YM25 854 aa23.78■■□□□ 1.4
CLIP3-206ENST00000593074 TFCP2Q12800 502 aa23.78■■□□□ 1.4
CLIP3-206ENST00000593074 ZNF330Q9Y3S2 320 aaPredicted RBP23.78■■□□□ 1.4
CLIP3-206ENST00000593074 WNK3Q9BYP7 1800 aa23.78■■□□□ 1.4
CLIP3-206ENST00000593074 DDB1Q16531 1140 aa23.77■■□□□ 1.4
CLIP3-206ENST00000593074 RASEFQ8IZ41 740 aa23.77■■□□□ 1.4
CLIP3-206ENST00000593074 GZF1Q9H116 711 aaPredicted RBP23.77■■□□□ 1.4
CLIP3-206ENST00000593074 DBNLQ9UJU6 430 aaKnown RBP23.77■■□□□ 1.4
CLIP3-206ENST00000593074 FSD2A1L4K1 749 aa23.77■■□□□ 1.4
CLIP3-206ENST00000593074 PRIM1P49642 420 aaKnown RBP23.77■■□□□ 1.4
CLIP3-206ENST00000593074 KIF6Q6ZMV9 814 aa23.77■■□□□ 1.4
CLIP3-206ENST00000593074 KCNB2Q92953 911 aa23.77■■□□□ 1.4
CLIP3-206ENST00000593074 BOLA2Q9H3K6 86 aa23.77■■□□□ 1.4
CLIP3-206ENST00000593074 ATP5JP18859 108 aa23.76■■□□□ 1.39
CLIP3-206ENST00000593074 PTH1RQ03431 593 aa23.76■■□□□ 1.39
CLIP3-206ENST00000593074 TCIRG1Q13488 830 aa23.76■■□□□ 1.39
CLIP3-206ENST00000593074 L1TD1Q5T7N2 865 aaKnown RBP23.76■■□□□ 1.39
CLIP3-206ENST00000593074 TTC14Q96N46 770 aa23.76■■□□□ 1.39
CLIP3-206ENST00000593074 ZDHHC9Q9Y397 364 aa23.76■■□□□ 1.39
CLIP3-206ENST00000593074 CCDC171Q6TFL3 1326 aa23.76■■□□□ 1.39
CLIP3-206ENST00000593074 ISCA1Q9BUE6 129 aa23.75■■□□□ 1.39
CLIP3-206ENST00000593074 SPATA31A5Q5VU36 1347 aa23.75■■□□□ 1.39
CLIP3-206ENST00000593074 SPATA31A7Q8IWB4 1347 aa23.75■■□□□ 1.39
CLIP3-206ENST00000593074 NMIQ13287 307 aaPredicted RBP23.74■■□□□ 1.39
CLIP3-206ENST00000593074 FAM227BQ96M60 508 aa23.74■■□□□ 1.39
CLIP3-206ENST00000593074 RFX7Q2KHR2 1363 aa23.74■■□□□ 1.39
CLIP3-206ENST00000593074 MED23Q9ULK4 1368 aa23.74■■□□□ 1.39
CLIP3-206ENST00000593074 CYP19A1P11511 503 aaPredicted RBP23.74■■□□□ 1.39
CLIP3-206ENST00000593074 SLC4A9Q96Q91 983 aa23.74■■□□□ 1.39
CLIP3-206ENST00000593074 FSD1Q9BTV5 496 aa23.74■■□□□ 1.39
CLIP3-206ENST00000593074 TRIM28Q13263 835 aaKnown RBP23.73■■□□□ 1.39
CLIP3-206ENST00000593074 CHMP3Q9Y3E7 222 aa23.73■■□□□ 1.39
CLIP3-206ENST00000593074 CCDC9Q9Y3X0 531 aaKnown RBP23.73■■□□□ 1.39
CLIP3-206ENST00000593074 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.73■■□□□ 1.39
CLIP3-206ENST00000593074 JCADQ9P266 1359 aa23.73■■□□□ 1.39
CLIP3-206ENST00000593074 NECTIN1Q15223 517 aa23.72■■□□□ 1.39
CLIP3-206ENST00000593074 NOL8Q76FK4 1167 aaKnown RBP23.72■■□□□ 1.39
CLIP3-206ENST00000593074 ARXQ96QS3 562 aa23.72■■□□□ 1.39
CLIP3-206ENST00000593074 ATG9AQ7Z3C6 839 aa23.72■■□□□ 1.39
CLIP3-206ENST00000593074 NRAPQ86VF7 1730 aa23.72■■□□□ 1.39
CLIP3-206ENST00000593074 A0A0D9SFI3 127 aa23.71■■□□□ 1.39
CLIP3-206ENST00000593074 GOLGA6L3A6NEY3 463 aa23.71■■□□□ 1.39
CLIP3-206ENST00000593074 MAP4K1Q92918 833 aa23.71■■□□□ 1.39
CLIP3-206ENST00000593074 TM6SF1Q9BZW5 370 aa23.71■■□□□ 1.39
CLIP3-206ENST00000593074 UBAP1LF5GYI3 381 aa23.71■■□□□ 1.39
CLIP3-206ENST00000593074 BARGINQ6ZT62 677 aa23.71■■□□□ 1.39
CLIP3-206ENST00000593074 BRPF3Q9ULD4 1205 aa23.71■■□□□ 1.39
CLIP3-206ENST00000593074 MAP3K15Q6ZN16 1313 aa23.7■■□□□ 1.39
CLIP3-206ENST00000593074 PRPF40BQ6NWY9 871 aaKnown RBP23.7■■□□□ 1.38
CLIP3-206ENST00000593074 DBNDD2Q9BQY9 259 aa23.7■■□□□ 1.38
CLIP3-206ENST00000593074 GPR108Q9NPR9 543 aa23.7■■□□□ 1.38
CLIP3-206ENST00000593074 ISY1Q9ULR0 285 aaKnown RBP23.7■■□□□ 1.38
CLIP3-206ENST00000593074 KLHL40Q2TBA0 621 aa23.69■■□□□ 1.38
CLIP3-206ENST00000593074 RBM8AQ9Y5S9 174 aaKnown RBP23.69■■□□□ 1.38
CLIP3-206ENST00000593074 SLIT2O94813 1529 aa23.69■■□□□ 1.38
CLIP3-206ENST00000593074 BRD1O95696 1058 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms