RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 GFRA3O60609 400 aa11.8□□□□□ -0.52
SMAD4-209ENST00000589941 PSME1Q06323 249 aa11.8□□□□□ -0.52
SMAD4-209ENST00000589941 CHRNA2Q15822 529 aa11.8□□□□□ -0.52
SMAD4-209ENST00000589941 STRN4Q9NRL3 753 aa11.8□□□□□ -0.52
SMAD4-209ENST00000589941 ATP7BP35670 1465 aa11.8□□□□□ -0.52
SMAD4-209ENST00000589941 MAP3K5Q99683 1374 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 ATP10DQ9P241 1426 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 MAGEB6P1A0A0J9YX57 407 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 FLIIQ13045 1269 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 BPHLQ86WA6 291 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-209ENST00000589941 POM121Q96HA1 1249 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 IRX2Q9BZI1 471 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-209ENST00000589941 GDPD2Q9HCC8 539 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 PRDM11Q9NQV5 511 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 ITSN1Q15811 1721 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 QSER1Q2KHR3 1735 aa11.79□□□□□ -0.52
SMAD4-209ENST00000589941 YTHDC2Q9H6S0 1430 aaKnown RBP11.78□□□□□ -0.52
SMAD4-209ENST00000589941 APBB1O00213 710 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 VARSP26640 1264 aaKnown RBP11.78□□□□□ -0.52
SMAD4-209ENST00000589941 PNMA1Q8ND90 353 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 PMFBP1Q8TBY8 1022 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 ARHGAP9Q9BRR9 750 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 CARD14Q9BXL6 1004 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 TOR4AQ9NXH8 423 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 COG6Q9Y2V7 657 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 ADGRF5Q8IZF2 1346 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 ABCC11Q96J66 1382 aa11.78□□□□□ -0.52
SMAD4-209ENST00000589941 OVOS2A0A0G2JMS6 1433 aa11.77□□□□□ -0.52
SMAD4-209ENST00000589941 OVOS2A0A0J9YW53 1432 aa11.77□□□□□ -0.52
SMAD4-209ENST00000589941 OVOS2Q6IE36 1432 aa11.77□□□□□ -0.52
SMAD4-209ENST00000589941 WDR90Q96KV7 1748 aa11.77□□□□□ -0.52
SMAD4-209ENST00000589941 TMEM132EQ6IEE7 984 aa11.77□□□□□ -0.53
SMAD4-209ENST00000589941 C1QTNF2Q9BXJ5 285 aa11.77□□□□□ -0.53
SMAD4-209ENST00000589941 GTF3C3Q9Y5Q9 886 aa11.77□□□□□ -0.53
SMAD4-209ENST00000589941 TLL2Q9Y6L7 1015 aa11.77□□□□□ -0.53
SMAD4-209ENST00000589941 NHSQ6T4R5 1651 aa11.76□□□□□ -0.53
SMAD4-209ENST00000589941 HSPA6P17066 643 aa11.76□□□□□ -0.53
SMAD4-209ENST00000589941 PDE3BQ13370 1112 aa11.76□□□□□ -0.53
SMAD4-209ENST00000589941 IRF5Q13568 498 aa11.76□□□□□ -0.53
SMAD4-209ENST00000589941 CYP4X1Q8N118 509 aa11.76□□□□□ -0.53
SMAD4-209ENST00000589941 FBXO45P0C2W1 286 aa11.75□□□□□ -0.53
SMAD4-209ENST00000589941 PTK2Q05397 1052 aa11.75□□□□□ -0.53
SMAD4-209ENST00000589941 ERFEQ4G0M1 354 aa11.75□□□□□ -0.53
SMAD4-209ENST00000589941 SNIP1Q8TAD8 396 aaKnown RBP11.75□□□□□ -0.53
SMAD4-209ENST00000589941 GPSM3Q9Y4H4 160 aa11.75□□□□□ -0.53
SMAD4-209ENST00000589941 PIK3C2GO75747 1445 aa11.75□□□□□ -0.53
SMAD4-209ENST00000589941 ANKARQ7Z5J8 1434 aa11.75□□□□□ -0.53
SMAD4-209ENST00000589941 J3QL48 77 aa11.74□□□□□ -0.53
SMAD4-209ENST00000589941 GPR162Q16538 588 aa11.74□□□□□ -0.53
SMAD4-209ENST00000589941 LARP1Q6PKG0 1096 aaKnown RBP11.74□□□□□ -0.53
SMAD4-209ENST00000589941 FAM174AQ8TBP5 190 aa11.74□□□□□ -0.53
SMAD4-209ENST00000589941 ADAM32Q8TC27 787 aa11.74□□□□□ -0.53
SMAD4-209ENST00000589941 RGPD5Q99666 1765 aa11.74□□□□□ -0.53
SMAD4-209ENST00000589941 BTAF1O14981 1849 aa11.74□□□□□ -0.53
SMAD4-209ENST00000589941 TTC24A2A3L6 582 aaPredicted RBP11.73□□□□□ -0.53
SMAD4-209ENST00000589941 NRG2O14511 850 aaPredicted RBP11.73□□□□□ -0.53
SMAD4-209ENST00000589941 ABL2P42684 1182 aa11.73□□□□□ -0.53
SMAD4-209ENST00000589941 ARXQ96QS3 562 aa11.73□□□□□ -0.53
SMAD4-209ENST00000589941 MTFR1LQ9H019 292 aa11.73□□□□□ -0.53
SMAD4-209ENST00000589941 TULP4Q9NRJ4 1543 aa11.73□□□□□ -0.53
SMAD4-209ENST00000589941 ACIN1Q9UKV3 1341 aaKnown RBP11.73□□□□□ -0.53
SMAD4-209ENST00000589941 COL5A2P05997 1499 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-209ENST00000589941 PRR36Q9H6K5 1346 aa11.72□□□□□ -0.53
SMAD4-209ENST00000589941 ZBBXA8MT70 800 aa11.72□□□□□ -0.53
SMAD4-209ENST00000589941 PLSCR1O15162 318 aa11.72□□□□□ -0.53
SMAD4-209ENST00000589941 ALDH1A1P00352 501 aa11.72□□□□□ -0.53
SMAD4-209ENST00000589941 COL13A1Q5TAT6 717 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-209ENST00000589941 ZBTB33Q86T24 672 aa11.72□□□□□ -0.53
SMAD4-209ENST00000589941 ADCY9O60503 1353 aa11.71□□□□□ -0.53
SMAD4-209ENST00000589941 RPGRIP1LQ68CZ1 1315 aa11.71□□□□□ -0.53
SMAD4-209ENST00000589941 SMPD1P17405 629 aa11.71□□□□□ -0.53
SMAD4-209ENST00000589941 SAFB2Q14151 953 aaKnown RBP eCLIP11.71□□□□□ -0.53
SMAD4-209ENST00000589941 NLGN2Q8NFZ4 835 aa11.71□□□□□ -0.53
SMAD4-209ENST00000589941 PRM3Q9NNZ6 103 aa11.71□□□□□ -0.53
SMAD4-209ENST00000589941 PCNTO95613 3336 aa11.7□□□□□ -0.54
SMAD4-209ENST00000589941 YBX3P16989 372 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMAD4-209ENST00000589941 SLC15A2Q16348 729 aa11.7□□□□□ -0.54
SMAD4-209ENST00000589941 TRMT44Q8IYL2 757 aaKnown RBP11.7□□□□□ -0.54
SMAD4-209ENST00000589941 CLUAP1Q96AJ1 413 aa11.7□□□□□ -0.54
SMAD4-209ENST00000589941 FAM187AA6NFU0 413 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 ZC3H6P61129 1189 aaKnown RBP11.69□□□□□ -0.54
SMAD4-209ENST00000589941 NR1H3Q13133 447 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 ARID5BQ14865 1188 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 TCP11L2Q8N4U5 519 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 MPNDQ8N594 471 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 CDK15Q96Q40 435 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 STK32BQ9NY57 414 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 COL18A1P39060 1754 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 ARHGEF28Q8N1W1 1705 aaKnown RBP11.69□□□□□ -0.54
SMAD4-209ENST00000589941 SPATA31E1Q6ZUB1 1445 aa11.69□□□□□ -0.54
SMAD4-209ENST00000589941 GPRASP1Q5JY77 1395 aa11.68□□□□□ -0.54
SMAD4-209ENST00000589941 LAPTM4AQ15012 233 aa11.67□□□□□ -0.54
SMAD4-209ENST00000589941 TXNRD1Q16881 649 aa11.67□□□□□ -0.54
SMAD4-209ENST00000589941 NUTM2GQ5VZR2 741 aa11.67□□□□□ -0.54
SMAD4-209ENST00000589941 ZNF526Q8TF50 670 aaPredicted RBP11.67□□□□□ -0.54
SMAD4-209ENST00000589941 DHX57Q6P158 1386 aaKnown RBP11.67□□□□□ -0.54
SMAD4-209ENST00000589941 GRM5P41594 1212 aa11.66□□□□□ -0.54
SMAD4-209ENST00000589941 VAC14Q08AM6 782 aa11.66□□□□□ -0.54
SMAD4-209ENST00000589941 ZNF827Q17R98 1081 aa11.66□□□□□ -0.54
SMAD4-209ENST00000589941 AATKQ6ZMQ8 1374 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms