RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 NEXNQ0ZGT2 675 aa12.92□□□□□ -0.34
ZNF540-208ENST00000589857 RAB3GAP1Q15042 981 aa12.92□□□□□ -0.34
ZNF540-208ENST00000589857 QSER1Q2KHR3 1735 aa12.92□□□□□ -0.34
ZNF540-208ENST00000589857 PI4KAP1Q8N8J0 262 aa12.92□□□□□ -0.34
ZNF540-208ENST00000589857 OTUD7AQ8TE49 926 aaPredicted RBP12.92□□□□□ -0.34
ZNF540-208ENST00000589857 AK7Q96M32 723 aa12.92□□□□□ -0.34
ZNF540-208ENST00000589857 DDX21Q9NR30 783 aaKnown RBP eCLIP12.92□□□□□ -0.34
ZNF540-208ENST00000589857 C9orf78Q9NZ63 289 aaPredicted RBP12.92□□□□□ -0.34
ZNF540-208ENST00000589857 TTC41PQ6P2S7 1318 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 PNMA6EA0A0J9YXQ4 647 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 SRGAP3O43295 1099 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 SURF6O75683 361 aaKnown RBP12.91□□□□□ -0.34
ZNF540-208ENST00000589857 KCNQ4P56696 695 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 OS9Q13438 667 aaPredicted RBP12.91□□□□□ -0.34
ZNF540-208ENST00000589857 PPP1R42Q7Z4L9 355 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 CNTROBQ8N137 903 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 SPRYD3Q8NCJ5 442 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 LINS1Q8NG48 757 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 DCAF5Q96JK2 942 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 ESYT1Q9BSJ8 1104 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 BCL11AQ9H165 835 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 SLC52A2Q9HAB3 445 aa12.91□□□□□ -0.34
ZNF540-208ENST00000589857 PCDH11XQ9BZA7 1347 aa12.9□□□□□ -0.34
ZNF540-208ENST00000589857 PCDH11YQ9BZA8 1340 aa12.9□□□□□ -0.34
ZNF540-208ENST00000589857 ADAMTS7Q9UKP4 1686 aa12.9□□□□□ -0.34
ZNF540-208ENST00000589857 TRIM6-TRIM34B2RNG4 842 aa12.9□□□□□ -0.34
ZNF540-208ENST00000589857 TTC5Q8N0Z6 440 aa12.9□□□□□ -0.34
ZNF540-208ENST00000589857 RHPN1Q8TCX5 695 aa12.9□□□□□ -0.34
ZNF540-208ENST00000589857 RUFY2Q8WXA3 655 aa12.9□□□□□ -0.34
ZNF540-208ENST00000589857 USP42Q9H9J4 1324 aaKnown RBP12.89□□□□□ -0.35
ZNF540-208ENST00000589857 GLRX3O76003 335 aaKnown RBP12.89□□□□□ -0.35
ZNF540-208ENST00000589857 PHKG2P15735 406 aa12.89□□□□□ -0.35
ZNF540-208ENST00000589857 MSL1Q68DK7 614 aa12.89□□□□□ -0.35
ZNF540-208ENST00000589857 CLASRPQ8N2M8 674 aaKnown RBP12.89□□□□□ -0.35
ZNF540-208ENST00000589857 IL17RAQ96F46 866 aa12.89□□□□□ -0.35
ZNF540-208ENST00000589857 MAP3K2Q9Y2U5 619 aa12.89□□□□□ -0.35
ZNF540-208ENST00000589857 ADCY9O60503 1353 aa12.89□□□□□ -0.35
ZNF540-208ENST00000589857 UTYO14607 1347 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 ERBB4Q15303 1308 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 HIP1O00291 1037 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 CHMLP26374 656 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 APLP1P51693 650 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 ZNF790Q6PG37 636 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 CLEC17AQ6ZS10 378 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 ZNF526Q8TF50 670 aaPredicted RBP12.88□□□□□ -0.35
ZNF540-208ENST00000589857 RILPL2Q969X0 211 aa12.88□□□□□ -0.35
ZNF540-208ENST00000589857 MRC1P22897 1456 aa12.87□□□□□ -0.35
ZNF540-208ENST00000589857 TRAK2O60296 914 aa12.87□□□□□ -0.35
ZNF540-208ENST00000589857 SNRPA1P09661 255 aaKnown RBP12.87□□□□□ -0.35
ZNF540-208ENST00000589857 FMNL2Q96PY5 1086 aa12.87□□□□□ -0.35
ZNF540-208ENST00000589857 PALLDQ8WX93 1383 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 COL24A1Q17RW2 1714 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 SHANK3Q9BYB0 1731 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 GOLGA6L3A6NEY3 463 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 GRM8O00222 908 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 KCNQ3O43525 872 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 SSFA2P28290 1259 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 KIAA1211Q6ZU35 1233 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 RIC3Q7Z5B4 369 aa12.86□□□□□ -0.35
ZNF540-208ENST00000589857 TNPO1Q92973 898 aaKnown RBP12.86□□□□□ -0.35
ZNF540-208ENST00000589857 IFIT2P09913 472 aaKnown RBP12.85□□□□□ -0.35
ZNF540-208ENST00000589857 NBPF7P0C2Y1 421 aaPredicted RBP12.85□□□□□ -0.35
ZNF540-208ENST00000589857 G3BP1Q13283 466 aaKnown RBP eCLIP12.85□□□□□ -0.35
ZNF540-208ENST00000589857 ANO2Q9NQ90 1003 aa12.85□□□□□ -0.35
ZNF540-208ENST00000589857 COL15A1P39059 1388 aa12.84□□□□□ -0.35
ZNF540-208ENST00000589857 CABP4P57796 275 aa12.84□□□□□ -0.35
ZNF540-208ENST00000589857 INTS4Q96HW7 963 aaKnown RBP12.84□□□□□ -0.35
ZNF540-208ENST00000589857 ECHDC1Q9NTX5 307 aa12.84□□□□□ -0.35
ZNF540-208ENST00000589857 KDM6AO15550 1401 aaPredicted RBP12.84□□□□□ -0.35
ZNF540-208ENST00000589857 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.83□□□□□ -0.36
ZNF540-208ENST00000589857 TOMM70O94826 608 aa12.83□□□□□ -0.36
ZNF540-208ENST00000589857 PHF14O94880 888 aa12.83□□□□□ -0.36
ZNF540-208ENST00000589857 RBM42Q9BTD8 480 aaKnown RBP12.83□□□□□ -0.36
ZNF540-208ENST00000589857 IL1RAPL2Q9NP60 686 aa12.83□□□□□ -0.36
ZNF540-208ENST00000589857 DIAPH3Q9NSV4 1193 aa12.83□□□□□ -0.36
ZNF540-208ENST00000589857 LY75O60449 1722 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 ERVV-2B6SEH9 535 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 MRE11P49959 708 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 TGFB2P61812 414 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 NUTM1Q86Y26 1132 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 PI4K2BQ8TCG2 481 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 EVI5LQ96CN4 794 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 METTL22Q9BUU2 404 aaPredicted RBP12.82□□□□□ -0.36
ZNF540-208ENST00000589857 RAD50Q92878 1312 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 MEGF6O75095 1541 aa12.82□□□□□ -0.36
ZNF540-208ENST00000589857 CD2BP2O95400 341 aaKnown RBP12.81□□□□□ -0.36
ZNF540-208ENST00000589857 NEK4P51957 841 aa12.81□□□□□ -0.36
ZNF540-208ENST00000589857 NLGN1Q8N2Q7 840 aa12.81□□□□□ -0.36
ZNF540-208ENST00000589857 TMOD3Q9NYL9 352 aa12.81□□□□□ -0.36
ZNF540-208ENST00000589857 DOT1LQ8TEK3 1739 aa12.81□□□□□ -0.36
ZNF540-208ENST00000589857 GOLGB1Q14789 3259 aaKnown RBP12.81□□□□□ -0.36
ZNF540-208ENST00000589857 SIPA1L3O60292 1781 aaPredicted RBP12.81□□□□□ -0.36
ZNF540-208ENST00000589857 LOC102724428A0A0B4J2F2 783 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 SGSM2O43147 1006 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 ANXA1P04083 346 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 PDIA4P13667 645 aaKnown RBP12.8□□□□□ -0.36
ZNF540-208ENST00000589857 HSPA4P34932 840 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 SIK1P57059 783 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 PDIA6Q15084 440 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 PROSER3Q2NL68 480 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms