RNA–Protein interactions for RNA: ENST00000589536.5

GRN-215, Transcript of granulin precursor, human

TSL 3

Gene GRN, Length 546 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GRN-215	ENST00000589536	XAGE3	Q8WTP9	111 aa		31.94	■■■□□ 2.7
GRN-215	ENST00000589536	DDX21	Q9NR30	783 aa	Known RBP eCLIP	31.94	■■■□□ 2.7
GRN-215	ENST00000589536	ZNF277	Q9NRM2	450 aa	Predicted RBP	31.94	■■■□□ 2.7
GRN-215	ENST00000589536	ANKRD36C	Q5JPF3	1778 aa		31.94	■■■□□ 2.7
GRN-215	ENST00000589536	RPGR	Q92834	1020 aa	Known RBP	31.93	■■■□□ 2.7
GRN-215	ENST00000589536	DDN	O94850	711 aa	Predicted RBP	31.92	■■■□□ 2.7
GRN-215	ENST00000589536	C3orf67	Q6ZVT6	689 aa		31.92	■■■□□ 2.7
GRN-215	ENST00000589536	CFAP44	Q96MT7	982 aa		31.92	■■■□□ 2.7
GRN-215	ENST00000589536	HOXB7	P09629	217 aa		31.91	■■■□□ 2.7
GRN-215	ENST00000589536	HTRA3	P83110	453 aa		31.91	■■■□□ 2.7
GRN-215	ENST00000589536	AIMP1	Q12904	312 aa	Known RBP	31.9	■■■□□ 2.7
GRN-215	ENST00000589536	UTP14A	Q9BVJ6	771 aa	Known RBP	31.9	■■■□□ 2.7
GRN-215	ENST00000589536	CHPF2	Q9P2E5	772 aa		31.9	■■■□□ 2.7
GRN-215	ENST00000589536	HSP90AB3P	Q58FF7	597 aa		31.89	■■■□□ 2.7
GRN-215	ENST00000589536	CRAMP1	Q96RY5	1269 aa		31.89	■■■□□ 2.7
GRN-215	ENST00000589536	APAF1	O14727	1248 aa		31.88	■■■□□ 2.69
GRN-215	ENST00000589536	SLC10A5	Q5PT55	438 aa		31.88	■■■□□ 2.69
GRN-215	ENST00000589536	HDGFL1	Q5TGJ6	251 aa		31.88	■■■□□ 2.69
GRN-215	ENST00000589536	CC2D2B	Q6DHV5	1058 aa		31.88	■■■□□ 2.69
GRN-215	ENST00000589536	SYNE4	Q8N205	404 aa		31.88	■■■□□ 2.69
GRN-215	ENST00000589536	PSMD1	Q99460	953 aa		31.88	■■■□□ 2.69
GRN-215	ENST00000589536	RNF123	Q5XPI4	1314 aa		31.88	■■■□□ 2.69
GRN-215	ENST00000589536	IARS	P41252	1262 aa	Known RBP	31.87	■■■□□ 2.69
GRN-215	ENST00000589536	NLRP10	Q86W26	655 aa		31.87	■■■□□ 2.69
GRN-215	ENST00000589536	RBM17	Q96I25	401 aa	Known RBP	31.87	■■■□□ 2.69
GRN-215	ENST00000589536	L3MBTL3	Q96JM7	780 aa	Predicted RBP	31.87	■■■□□ 2.69
GRN-215	ENST00000589536	MBIP	Q9NS73	344 aa		31.87	■■■□□ 2.69
GRN-215	ENST00000589536	ZNF541	Q9H0D2	1346 aa		31.86	■■■□□ 2.69
GRN-215	ENST00000589536	ZNF853	P0CG23	659 aa		31.86	■■■□□ 2.69
GRN-215	ENST00000589536	TCIRG1	Q13488	830 aa		31.86	■■■□□ 2.69
GRN-215	ENST00000589536	SLC51A	Q86UW1	340 aa		31.85	■■■□□ 2.69
GRN-215	ENST00000589536	NLRP3	Q96P20	1036 aa		31.85	■■■□□ 2.69
GRN-215	ENST00000589536	DUSP27	Q5VZP5	1158 aa		31.84	■■■□□ 2.69
GRN-215	ENST00000589536	PPEF1	O14829	653 aa	Predicted RBP	31.83	■■■□□ 2.69
GRN-215	ENST00000589536	KLRG1	Q96E93	195 aa		31.83	■■■□□ 2.69
GRN-215	ENST00000589536	DBF4	Q9UBU7	674 aa	Predicted RBP	31.83	■■■□□ 2.69
GRN-215	ENST00000589536	FZD9	O00144	591 aa		31.82	■■■□□ 2.68
GRN-215	ENST00000589536	GRIPAP1	Q4V328	841 aa		31.82	■■■□□ 2.68
GRN-215	ENST00000589536	IFT57	Q9NWB7	429 aa		31.82	■■■□□ 2.68
GRN-215	ENST00000589536	COL4A5	P29400	1685 aa		31.82	■■■□□ 2.68
GRN-215	ENST00000589536	SCN4A	P35499	1836 aa		31.82	■■■□□ 2.68
GRN-215	ENST00000589536	LAMB2	P55268	1798 aa		31.81	■■■□□ 2.68
GRN-215	ENST00000589536	IQCA1L	A6NCM1	817 aa		31.81	■■■□□ 2.68
GRN-215	ENST00000589536	PLBD2	Q8NHP8	589 aa		31.81	■■■□□ 2.68
GRN-215	ENST00000589536	POTEI	P0CG38	1075 aa		31.8	■■■□□ 2.68
GRN-215	ENST00000589536	POTEJ	P0CG39	1038 aa		31.8	■■■□□ 2.68
GRN-215	ENST00000589536	ABCC4	O15439	1325 aa		31.79	■■■□□ 2.68
GRN-215	ENST00000589536	SH3TC1	Q8TE82	1336 aa		31.78	■■■□□ 2.68
GRN-215	ENST00000589536	HCLS1	P14317	486 aa	Predicted RBP	31.78	■■■□□ 2.68
GRN-215	ENST00000589536	CALD1	Q05682	793 aa	Known RBP	31.78	■■■□□ 2.68
GRN-215	ENST00000589536	CCDC184	Q52MB2	194 aa		31.78	■■■□□ 2.68
GRN-215	ENST00000589536	CHADL	Q6NUI6	762 aa		31.78	■■■□□ 2.68
GRN-215	ENST00000589536	ANKRD13D	Q6ZTN6	518 aa		31.78	■■■□□ 2.68
GRN-215	ENST00000589536	TAF1D	Q9H5J8	278 aa	Predicted RBP	31.78	■■■□□ 2.68
GRN-215	ENST00000589536	TRMT112	Q9UI30	125 aa	Known RBP	31.78	■■■□□ 2.68
GRN-215	ENST00000589536	GNAI1	P63096	354 aa		31.77	■■■□□ 2.68
GRN-215	ENST00000589536	HYPK	Q9NX55	129 aa		31.77	■■■□□ 2.68
GRN-215	ENST00000589536	TCERG1	O14776	1098 aa	Known RBP	31.76	■■■□□ 2.67
GRN-215	ENST00000589536	JMY	Q8N9B5	988 aa		31.76	■■■□□ 2.67
GRN-215	ENST00000589536	JDP2	Q8WYK2	163 aa		31.76	■■■□□ 2.67
GRN-215	ENST00000589536	ISCA1	Q9BUE6	129 aa		31.76	■■■□□ 2.67
GRN-215	ENST00000589536	ATP6V0A2	Q9Y487	856 aa		31.76	■■■□□ 2.67
GRN-215	ENST00000589536	ZEB1	P37275	1124 aa	Predicted RBP	31.74	■■■□□ 2.67
GRN-215	ENST00000589536	LDHD	Q86WU2	507 aa		31.73	■■■□□ 2.67
GRN-215	ENST00000589536	GPC2	Q8N158	579 aa		31.73	■■■□□ 2.67
GRN-215	ENST00000589536	DDX60	Q8IY21	1712 aa	Known RBP	31.72	■■■□□ 2.67
GRN-215	ENST00000589536	ZNF428	Q96B54	188 aa		31.72	■■■□□ 2.67
GRN-215	ENST00000589536	HACL1	Q9UJ83	578 aa		31.72	■■■□□ 2.67
GRN-215	ENST00000589536	ADAMTSL1	Q8N6G6	1762 aa		31.71	■■■□□ 2.67
GRN-215	ENST00000589536	LARGE2	Q8N3Y3	721 aa		31.71	■■■□□ 2.67
GRN-215	ENST00000589536	ATP5J2-PTCD1	G3V325	749 aa		31.7	■■■□□ 2.67
GRN-215	ENST00000589536	BBOX1	O75936	387 aa		31.7	■■■□□ 2.67
GRN-215	ENST00000589536	ELL2	O00472	640 aa	Predicted RBP	31.69	■■■□□ 2.66
GRN-215	ENST00000589536	EPHX2	P34913	555 aa		31.69	■■■□□ 2.66
GRN-215	ENST00000589536	EIF6	P56537	245 aa	Known RBP	31.69	■■■□□ 2.66
GRN-215	ENST00000589536	C8orf58	Q8NAV2	365 aa		31.69	■■■□□ 2.66
GRN-215	ENST00000589536	TMX4	Q9H1E5	349 aa	Predicted RBP	31.69	■■■□□ 2.66
GRN-215	ENST00000589536	PCNT	O95613	3336 aa		31.69	■■■□□ 2.66
GRN-215	ENST00000589536	TRIM28	Q13263	835 aa	Known RBP	31.68	■■■□□ 2.66
GRN-215	ENST00000589536	GRAP	Q13588	217 aa		31.68	■■■□□ 2.66
GRN-215	ENST00000589536	DDX46	Q7L014	1031 aa	Known RBP	31.68	■■■□□ 2.66
GRN-215	ENST00000589536	SP8	Q8IXZ3	490 aa		31.68	■■■□□ 2.66
GRN-215	ENST00000589536	GRAPL	Q8TC17	118 aa	Predicted RBP	31.68	■■■□□ 2.66
GRN-215	ENST00000589536	RTFDC1	Q9BY42	306 aa	Predicted RBP	31.68	■■■□□ 2.66
GRN-215	ENST00000589536	FAM89A	Q96GI7	184 aa		31.67	■■■□□ 2.66
GRN-215	ENST00000589536	PPIP5K2	O43314	1243 aa		31.66	■■■□□ 2.66
GRN-215	ENST00000589536	EAPP	Q56P03	285 aa	Predicted RBP	31.66	■■■□□ 2.66
GRN-215	ENST00000589536	VPS33B	Q9H267	617 aa		31.66	■■■□□ 2.66
GRN-215	ENST00000589536	PHAX	Q9H814	394 aa	Known RBP	31.66	■■■□□ 2.66
GRN-215	ENST00000589536	PASK	Q96RG2	1323 aa		31.66	■■■□□ 2.66
GRN-215	ENST00000589536	LTBP1	Q14766	1721 aa		31.66	■■■□□ 2.66
GRN-215	ENST00000589536	AOC3	Q16853	763 aa		31.65	■■■□□ 2.66
GRN-215	ENST00000589536	NIM1K	Q8IY84	436 aa		31.65	■■■□□ 2.66
GRN-215	ENST00000589536	TAF1	P21675	1872 aa		31.65	■■■□□ 2.66
GRN-215	ENST00000589536	LRRC37A	A6NMS7	1700 aa		31.64	■■■□□ 2.66
GRN-215	ENST00000589536	GOLGA2	Q08379	1002 aa		31.64	■■■□□ 2.66
GRN-215	ENST00000589536	CCDC27	Q2M243	656 aa		31.64	■■■□□ 2.66
GRN-215	ENST00000589536	CREBZF	Q9NS37	354 aa		31.64	■■■□□ 2.66
GRN-215	ENST00000589536	GJA3	Q9Y6H8	435 aa		31.64	■■■□□ 2.66
GRN-215	ENST00000589536	SF3B3	Q15393	1217 aa	Known RBP	31.63	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms