RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 AGBL1Q96MI9 1066 aa11.33□□□□□ -0.6
VMP1-208ENST00000588617 C12orf49Q9H741 205 aa11.33□□□□□ -0.6
VMP1-208ENST00000588617 BCS1LQ9Y276 419 aa11.33□□□□□ -0.6
VMP1-208ENST00000588617 GIPC1O14908 333 aa11.32□□□□□ -0.6
VMP1-208ENST00000588617 PTPN12Q05209 780 aaKnown RBP11.32□□□□□ -0.6
VMP1-208ENST00000588617 NNTQ13423 1086 aa11.32□□□□□ -0.6
VMP1-208ENST00000588617 RHBDD1Q8TEB9 315 aa11.32□□□□□ -0.6
VMP1-208ENST00000588617 SRA1Q9HD15 236 aaKnown RBP11.32□□□□□ -0.6
VMP1-208ENST00000588617 TMA7Q9Y2S6 64 aaKnown RBP11.32□□□□□ -0.6
VMP1-208ENST00000588617 RELBQ01201 579 aa11.31□□□□□ -0.6
VMP1-208ENST00000588617 USPL1Q5W0Q7 1092 aa11.31□□□□□ -0.6
VMP1-208ENST00000588617 PI16Q6UXB8 463 aa11.31□□□□□ -0.6
VMP1-208ENST00000588617 Q6ZNB5 142 aa11.31□□□□□ -0.6
VMP1-208ENST00000588617 RHPN1Q8TCX5 695 aa11.31□□□□□ -0.6
VMP1-208ENST00000588617 CCDC74AQ96AQ1 378 aa11.31□□□□□ -0.6
VMP1-208ENST00000588617 USP31Q70CQ4 1352 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 GFRA3O60609 400 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 ALDH1A1P00352 501 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 RBL2Q08999 1139 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 LAPTM4AQ15012 233 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 HIF1AQ16665 826 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 Q6ZVU0 165 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 EPS8L3Q8TE67 593 aaKnown RBP11.3□□□□□ -0.6
VMP1-208ENST00000588617 OSBPL7Q9BZF2 842 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 FOXD3Q9UJU5 478 aaPredicted RBP11.3□□□□□ -0.6
VMP1-208ENST00000588617 WASF2Q9Y6W5 498 aa11.3□□□□□ -0.6
VMP1-208ENST00000588617 TGFBR3LH3BV60 316 aa11.29□□□□□ -0.6
VMP1-208ENST00000588617 TAF1CQ15572 869 aaPredicted RBP11.29□□□□□ -0.6
VMP1-208ENST00000588617 GNASQ5JWF2 1037 aa11.29□□□□□ -0.6
VMP1-208ENST00000588617 HIRIP3Q9BW71 556 aaPredicted RBP11.29□□□□□ -0.6
VMP1-208ENST00000588617 ZNF395Q9H8N7 513 aaPredicted RBP11.29□□□□□ -0.6
VMP1-208ENST00000588617 TNFRSF21O75509 655 aa11.28□□□□□ -0.6
VMP1-208ENST00000588617 IRS1P35568 1242 aa11.28□□□□□ -0.6
VMP1-208ENST00000588617 PLA2G4AP47712 749 aa11.28□□□□□ -0.6
VMP1-208ENST00000588617 SOGA3Q5TF21 947 aa11.28□□□□□ -0.6
VMP1-208ENST00000588617 MEI1Q5TIA1 1274 aa11.28□□□□□ -0.6
VMP1-208ENST00000588617 AIDAQ96BJ3 306 aa11.28□□□□□ -0.6
VMP1-208ENST00000588617 TLDC2A0PJX2 215 aa11.27□□□□□ -0.61
VMP1-208ENST00000588617 LCE2BO14633 110 aa11.27□□□□□ -0.61
VMP1-208ENST00000588617 STK10O94804 968 aaKnown RBP11.27□□□□□ -0.61
VMP1-208ENST00000588617 SLC19A1P41440 591 aa11.27□□□□□ -0.61
VMP1-208ENST00000588617 ITPKCQ96DU7 683 aa11.27□□□□□ -0.61
VMP1-208ENST00000588617 ZSWIM4Q9H7M6 989 aa11.27□□□□□ -0.61
VMP1-208ENST00000588617 FAM8A1Q9UBU6 413 aa11.27□□□□□ -0.61
VMP1-208ENST00000588617 FNDC3AQ9Y2H6 1198 aaKnown RBP11.27□□□□□ -0.61
VMP1-208ENST00000588617 NRG2O14511 850 aaPredicted RBP11.26□□□□□ -0.61
VMP1-208ENST00000588617 ZIC2O95409 532 aaPredicted RBP11.26□□□□□ -0.61
VMP1-208ENST00000588617 IDH3AP50213 366 aa11.26□□□□□ -0.61
VMP1-208ENST00000588617 SLC27A3Q5K4L6 730 aa11.26□□□□□ -0.61
VMP1-208ENST00000588617 ZNF438Q7Z4V0 828 aa11.26□□□□□ -0.61
VMP1-208ENST00000588617 ANKRD13AQ8IZ07 590 aa11.26□□□□□ -0.61
VMP1-208ENST00000588617 SNX29Q8TEQ0 813 aa11.26□□□□□ -0.61
VMP1-208ENST00000588617 SUSD3Q96L08 255 aa11.26□□□□□ -0.61
VMP1-208ENST00000588617 USP17L7P0C7H9 530 aa11.25□□□□□ -0.61
VMP1-208ENST00000588617 NBPF1Q3BBV0 1214 aa11.25□□□□□ -0.61
VMP1-208ENST00000588617 XKR5Q6UX68 686 aa11.25□□□□□ -0.61
VMP1-208ENST00000588617 MCF2L2Q86YR7 1114 aa11.25□□□□□ -0.61
VMP1-208ENST00000588617 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.25□□□□□ -0.613e-25■□□□□ 8.3
VMP1-208ENST00000588617 ZFYVE28Q9HCC9 887 aa11.25□□□□□ -0.61
VMP1-208ENST00000588617 USP20Q9Y2K6 914 aa11.25□□□□□ -0.61
VMP1-208ENST00000588617 PHACTR2O75167 634 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 C4orf17Q53FE4 359 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 SPRYD7Q5W111 196 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 TRIM67Q6ZTA4 783 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 CMTR1Q8N1G2 835 aaKnown RBP11.24□□□□□ -0.61
VMP1-208ENST00000588617 ZNF280CQ8ND82 737 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 C7orf43Q8WVR3 580 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 GRIP2Q9C0E4 1043 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 PIF1Q9H611 641 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 ZFAND3Q9H8U3 227 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 DMGDHQ9UI17 866 aaKnown RBP11.24□□□□□ -0.61
VMP1-208ENST00000588617 PDZRN3Q9UPQ7 1066 aa11.24□□□□□ -0.61
VMP1-208ENST00000588617 ST13P50502 369 aaKnown RBP11.23□□□□□ -0.61
VMP1-208ENST00000588617 PAK2Q13177 524 aa11.23□□□□□ -0.61
VMP1-208ENST00000588617 IER5Q5VY09 327 aa11.23□□□□□ -0.61
VMP1-208ENST00000588617 ZNF662Q6ZS27 426 aa11.23□□□□□ -0.61
VMP1-208ENST00000588617 HSH2DQ96JZ2 352 aa11.23□□□□□ -0.61
VMP1-208ENST00000588617 UBAP1LF5GYI3 381 aa11.22□□□□□ -0.61
VMP1-208ENST00000588617 FGRP09769 529 aa11.22□□□□□ -0.61
VMP1-208ENST00000588617 TATP17735 454 aaPredicted RBP11.22□□□□□ -0.61
VMP1-208ENST00000588617 ATF4P18848 351 aaPredicted RBP11.22□□□□□ -0.61
VMP1-208ENST00000588617 GJA8P48165 433 aa11.22□□□□□ -0.61
VMP1-208ENST00000588617 ARSDP51689 593 aa11.22□□□□□ -0.61
VMP1-208ENST00000588617 WDR4P57081 412 aaKnown RBP11.22□□□□□ -0.61
VMP1-208ENST00000588617 PDE12Q6L8Q7 609 aaKnown RBP11.22□□□□□ -0.61
VMP1-208ENST00000588617 NXPE4Q6UWF7 544 aa11.22□□□□□ -0.61
VMP1-208ENST00000588617 NPHS2Q9NP85 383 aa11.22□□□□□ -0.61
VMP1-208ENST00000588617 ZDHHC3Q9NYG2 299 aa11.22□□□□□ -0.61
VMP1-208ENST00000588617 RTCBQ9Y3I0 505 aaKnown RBP11.22□□□□□ -0.61
VMP1-208ENST00000588617 GADD45BO75293 160 aaPredicted RBP11.21□□□□□ -0.61
VMP1-208ENST00000588617 POLR3DP05423 398 aaPredicted RBP11.21□□□□□ -0.61
VMP1-208ENST00000588617 BICDL1Q6ZP65 573 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 GPRASP2Q96D09 838 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 KLRG1Q96E93 195 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 SRCIN1Q9C0H9 1055 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 OSBPL2Q9H1P3 480 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 ELP3Q9H9T3 547 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 NEUROD4Q9HD90 331 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 ANKIB1Q9P2G1 1089 aa11.21□□□□□ -0.61
VMP1-208ENST00000588617 GPC1P35052 558 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms