RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 NPM2Q86SE8 214 aaKnown RBP10.29□□□□□ -0.76
VMP1-204ENST00000587259 ZNF579Q8NAF0 562 aaKnown RBP10.29□□□□□ -0.76
VMP1-204ENST00000587259 NIP7Q9Y221 180 aaKnown RBP eCLIP10.29□□□□□ -0.76
VMP1-204ENST00000587259 RNF123Q5XPI4 1314 aa10.29□□□□□ -0.76
VMP1-204ENST00000587259 ZBED9Q6R2W3 1325 aa10.29□□□□□ -0.76
VMP1-204ENST00000587259 PASKQ96RG2 1323 aa10.29□□□□□ -0.76
VMP1-204ENST00000587259 CNTNAP1P78357 1384 aa10.28□□□□□ -0.76
VMP1-204ENST00000587259 HNRNPUQ00839 825 aaKnown RBP eCLIP10.28□□□□□ -0.76
VMP1-204ENST00000587259 CCDC93Q567U6 631 aa10.28□□□□□ -0.76
VMP1-204ENST00000587259 MAP1SQ66K74 1059 aaPredicted RBP10.28□□□□□ -0.76
VMP1-204ENST00000587259 NUTM1Q86Y26 1132 aa10.28□□□□□ -0.76
VMP1-204ENST00000587259 COL4A5P29400 1685 aa10.28□□□□□ -0.76
VMP1-204ENST00000587259 ABCC12Q96J65 1359 aa10.27□□□□□ -0.76
VMP1-204ENST00000587259 TCERG1O14776 1098 aaKnown RBP10.27□□□□□ -0.77
VMP1-204ENST00000587259 ITGBL1O95965 494 aaPredicted RBP10.27□□□□□ -0.77
VMP1-204ENST00000587259 U2AF1L5P0DN76 240 aaPredicted RBP10.27□□□□□ -0.77
VMP1-204ENST00000587259 NPR1P16066 1061 aa10.27□□□□□ -0.77
VMP1-204ENST00000587259 U2AF1Q01081 240 aaKnown RBP eCLIP10.27□□□□□ -0.77
VMP1-204ENST00000587259 FKBP4Q02790 459 aaKnown RBP eCLIP10.27□□□□□ -0.77
VMP1-204ENST00000587259 LDHDQ86WU2 507 aa10.27□□□□□ -0.77
VMP1-204ENST00000587259 PHF12Q96QT6 1004 aa10.27□□□□□ -0.77
VMP1-204ENST00000587259 PDZRN3Q9UPQ7 1066 aa10.27□□□□□ -0.77
VMP1-204ENST00000587259 SNRPA1P09661 255 aaKnown RBP10.26□□□□□ -0.77
VMP1-204ENST00000587259 EPHX2P34913 555 aa10.26□□□□□ -0.77
VMP1-204ENST00000587259 FAM9BQ8IZU0 186 aa10.26□□□□□ -0.77
VMP1-204ENST00000587259 SYNE4Q8N205 404 aa10.26□□□□□ -0.77
VMP1-204ENST00000587259 L3MBTL3Q96JM7 780 aaPredicted RBP10.26□□□□□ -0.77
VMP1-204ENST00000587259 ARFGEF2Q9Y6D5 1785 aa10.26□□□□□ -0.77
VMP1-204ENST00000587259 IQCA1LA6NCM1 817 aa10.25□□□□□ -0.77
VMP1-204ENST00000587259 TMEM88BA6NKF7 163 aa10.25□□□□□ -0.77
VMP1-204ENST00000587259 GPTP24298 496 aa10.25□□□□□ -0.77
VMP1-204ENST00000587259 IARSP41252 1262 aaKnown RBP10.25□□□□□ -0.77
VMP1-204ENST00000587259 LBX1P52954 281 aa10.25□□□□□ -0.77
VMP1-204ENST00000587259 C3orf67Q6ZVT6 689 aa10.25□□□□□ -0.77
VMP1-204ENST00000587259 PNISRQ8TF01 805 aaKnown RBP10.25□□□□□ -0.77
VMP1-204ENST00000587259 THUMPD2Q9BTF0 503 aaKnown RBP10.25□□□□□ -0.77
VMP1-204ENST00000587259 HACL1Q9UJ83 578 aa10.25□□□□□ -0.77
VMP1-204ENST00000587259 GJA3Q9Y6H8 435 aa10.25□□□□□ -0.77
VMP1-204ENST00000587259 KLRG2A4D1S0 409 aaPredicted RBP10.24□□□□□ -0.77
VMP1-204ENST00000587259 PPP2R1AP30153 589 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 GRM1Q13255 1194 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 SOGA3Q5TF21 947 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 CLEC4GQ6UXB4 293 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 TPTE2Q6XPS3 522 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 TTLL7Q6ZT98 887 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 CNTROBQ8N137 903 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 RTF1Q92541 710 aaKnown RBP10.24□□□□□ -0.77
VMP1-204ENST00000587259 ZNF428Q96B54 188 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 ZNF652Q9Y2D9 606 aa10.24□□□□□ -0.77
VMP1-204ENST00000587259 RRP7AQ9Y3A4 280 aaKnown RBP10.24□□□□□ -0.77
VMP1-204ENST00000587259 FZD9O00144 591 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 TRAF5O00463 557 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 GALR2O43603 387 aaPredicted RBP10.23□□□□□ -0.77
VMP1-204ENST00000587259 MYL6BP14649 208 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 GTF2E1P29083 439 aaPredicted RBP10.23□□□□□ -0.77
VMP1-204ENST00000587259 EPS15P42566 896 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 CLCN6P51797 869 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 CFAP53Q96M91 514 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 DCBLD2Q96PD2 775 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 TSPYL2Q9H2G4 693 aaPredicted RBP10.23□□□□□ -0.77
VMP1-204ENST00000587259 ZBTB3Q9H5J0 574 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 LTBP1Q14766 1721 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 UBN2Q6ZU65 1347 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 ADAMTSL1Q8N6G6 1762 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 SNED1Q8TER0 1413 aa10.23□□□□□ -0.77
VMP1-204ENST00000587259 SCN4AP35499 1836 aa10.22□□□□□ -0.77
VMP1-204ENST00000587259 CCDC184Q52MB2 194 aa10.22□□□□□ -0.77
VMP1-204ENST00000587259 RTKN2Q8IZC4 609 aa10.22□□□□□ -0.77
VMP1-204ENST00000587259 AIDAQ96BJ3 306 aa10.22□□□□□ -0.77
VMP1-204ENST00000587259 WBP1LQ9NX94 342 aa10.22□□□□□ -0.77
VMP1-204ENST00000587259 TSKSQ9UJT2 592 aa10.22□□□□□ -0.77
VMP1-204ENST00000587259 ABT1Q9ULW3 272 aaKnown RBP10.22□□□□□ -0.77
VMP1-204ENST00000587259 HSPA8P11142 646 aaKnown RBP10.21□□□□□ -0.77
VMP1-204ENST00000587259 CTCFP49711 727 aaPredicted RBP10.21□□□□□ -0.77
VMP1-204ENST00000587259 WDR43Q15061 677 aaKnown RBP eCLIP10.21□□□□□ -0.77
VMP1-204ENST00000587259 TAF7Q15545 349 aaPredicted RBP10.21□□□□□ -0.77
VMP1-204ENST00000587259 DEFB115Q30KQ5 88 aa10.21□□□□□ -0.77
VMP1-204ENST00000587259 SUSD4Q5VX71 490 aa10.21□□□□□ -0.77
VMP1-204ENST00000587259 PAXIP1Q6ZW49 1069 aaPredicted RBP10.21□□□□□ -0.77
VMP1-204ENST00000587259 GTF3C3Q9Y5Q9 886 aa10.21□□□□□ -0.77
VMP1-204ENST00000587259 ANXA1P04083 346 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 NEFLP07196 543 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 SCNN1DP51172 638 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 CRY2Q49AN0 593 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 LHX8Q68G74 356 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 CYP4F22Q6NT55 531 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 GPC2Q8N158 579 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 PLCD3Q8N3E9 789 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 WDR33Q9C0J8 1336 aaKnown RBP10.2□□□□□ -0.78
VMP1-204ENST00000587259 PRDM10Q9NQV6 1147 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 NUDCQ9Y266 331 aa10.2□□□□□ -0.78
VMP1-204ENST00000587259 MAP3K15Q6ZN16 1313 aa10.19□□□□□ -0.78
VMP1-204ENST00000587259 RASSF10A6NK89 507 aa10.19□□□□□ -0.78
VMP1-204ENST00000587259 ALDH1B1P30837 517 aa10.19□□□□□ -0.78
VMP1-204ENST00000587259 EIF4A1P60842 406 aaKnown RBP10.19□□□□□ -0.78
VMP1-204ENST00000587259 AOC3Q16853 763 aa10.19□□□□□ -0.78
VMP1-204ENST00000587259 LARGE2Q8N3Y3 721 aa10.19□□□□□ -0.78
VMP1-204ENST00000587259 JDP2Q8WYK2 163 aa10.19□□□□□ -0.78
VMP1-204ENST00000587259 RPGRQ92834 1020 aaKnown RBP10.19□□□□□ -0.78
VMP1-204ENST00000587259 DDX21Q9NR30 783 aaKnown RBP eCLIP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms