RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 PPP1R42Q7Z4L9 355 aa36.41■■■■□ 3.42
LIG3-208ENST00000586407 NLRP10Q86W26 655 aa36.4■■■■□ 3.42
LIG3-208ENST00000586407 UTP14AQ9BVJ6 771 aaKnown RBP36.4■■■■□ 3.42
LIG3-208ENST00000586407 LAMB2P55268 1798 aa36.4■■■■□ 3.42
LIG3-208ENST00000586407 DICER1Q9UPY3 1922 aaKnown RBP36.4■■■■□ 3.42
LIG3-208ENST00000586407 TCIRG1Q13488 830 aa36.39■■■■□ 3.42
LIG3-208ENST00000586407 CRY2Q49AN0 593 aa36.39■■■■□ 3.42
LIG3-208ENST00000586407 C7orf43Q8WVR3 580 aa36.39■■■■□ 3.42
LIG3-208ENST00000586407 HYPKQ9NX55 129 aa36.39■■■■□ 3.42
LIG3-208ENST00000586407 RIC1Q4ADV7 1423 aa36.39■■■■□ 3.42
LIG3-208ENST00000586407 HSP90AB3PQ58FF7 597 aa36.38■■■■□ 3.41
LIG3-208ENST00000586407 SYNE4Q8N205 404 aa36.38■■■■□ 3.41
LIG3-208ENST00000586407 PLBD2Q8NHP8 589 aa36.38■■■■□ 3.41
LIG3-208ENST00000586407 PHAXQ9H814 394 aaKnown RBP36.38■■■■□ 3.41
LIG3-208ENST00000586407 ANKRD13DQ6ZTN6 518 aa36.37■■■■□ 3.41
LIG3-208ENST00000586407 SLC51AQ86UW1 340 aa36.36■■■■□ 3.41
LIG3-208ENST00000586407 TAOK3Q9H2K8 898 aa36.36■■■■□ 3.41
LIG3-208ENST00000586407 RPGRQ92834 1020 aaKnown RBP36.35■■■■□ 3.41
LIG3-208ENST00000586407 ATP5J2-PTCD1G3V325 749 aa36.34■■■■□ 3.41
LIG3-208ENST00000586407 TCERG1O14776 1098 aaKnown RBP36.34■■■■□ 3.41
LIG3-208ENST00000586407 CCDC93Q567U6 631 aa36.33■■■■□ 3.41
LIG3-208ENST00000586407 HCLS1P14317 486 aaPredicted RBP36.32■■■■□ 3.4
LIG3-208ENST00000586407 ALDH1B1P30837 517 aa36.32■■■■□ 3.4
LIG3-208ENST00000586407 SOGA3Q5TF21 947 aa36.32■■■■□ 3.4
LIG3-208ENST00000586407 TRMT112Q9UI30 125 aaKnown RBP36.32■■■■□ 3.4
LIG3-208ENST00000586407 LTBP3Q9NS15 1303 aa36.32■■■■□ 3.4
LIG3-208ENST00000586407 IL16Q14005 1332 aa36.31■■■■□ 3.4
LIG3-208ENST00000586407 DDX60Q8IY21 1712 aaKnown RBP36.3■■■■□ 3.4
LIG3-208ENST00000586407 HOXA10P31260 410 aaPredicted RBP36.29■■■■□ 3.4
LIG3-208ENST00000586407 SLC10A5Q5PT55 438 aa36.29■■■■□ 3.4
LIG3-208ENST00000586407 ISCA1Q9BUE6 129 aa36.29■■■■□ 3.4
LIG3-208ENST00000586407 KDM2BQ8NHM5 1336 aa36.29■■■■□ 3.4
LIG3-208ENST00000586407 CCDC30Q5VVM6 783 aa36.28■■■■□ 3.4
LIG3-208ENST00000586407 NLRP3Q96P20 1036 aa36.28■■■■□ 3.4
LIG3-208ENST00000586407 TAF1P21675 1872 aa36.28■■■■□ 3.4
LIG3-208ENST00000586407 FANCIQ9NVI1 1328 aa36.28■■■■□ 3.4
LIG3-208ENST00000586407 GOLGA2Q08379 1002 aa36.27■■■■□ 3.4
LIG3-208ENST00000586407 NCBP3Q53F19 620 aaKnown RBP36.27■■■■□ 3.4
LIG3-208ENST00000586407 RIC3Q7Z5B4 369 aa36.27■■■■□ 3.4
LIG3-208ENST00000586407 RBM17Q96I25 401 aaKnown RBP36.27■■■■□ 3.4
LIG3-208ENST00000586407 RRAGCQ9HB90 399 aa36.27■■■■□ 3.4
LIG3-208ENST00000586407 SH3TC1Q8TE82 1336 aa36.27■■■■□ 3.4
LIG3-208ENST00000586407 ZC3H4Q9UPT8 1303 aaKnown RBP36.27■■■■□ 3.4
LIG3-208ENST00000586407 TWISTNBQ3B726 338 aaPredicted RBP36.26■■■■□ 3.4
LIG3-208ENST00000586407 RNF123Q5XPI4 1314 aa36.26■■■■□ 3.39
LIG3-208ENST00000586407 ZNF277Q9NRM2 450 aaPredicted RBP36.25■■■■□ 3.39
LIG3-208ENST00000586407 RTL5Q5HYW3 569 aaPredicted RBP36.24■■■■□ 3.39
LIG3-208ENST00000586407 CRAMP1Q96RY5 1269 aa36.24■■■■□ 3.39
LIG3-208ENST00000586407 SPINK5Q9NQ38 1064 aaPredicted RBP36.24■■■■□ 3.39
LIG3-208ENST00000586407 SNED1Q8TER0 1413 aa36.24■■■■□ 3.39
LIG3-208ENST00000586407 FKBP4Q02790 459 aaKnown RBP eCLIP36.23■■■■□ 3.39
LIG3-208ENST00000586407 WDR63Q8IWG1 891 aa36.23■■■■□ 3.39
LIG3-208ENST00000586407 FAM89AQ96GI7 184 aa36.23■■■■□ 3.39
LIG3-208ENST00000586407 GLTPD2A6NH11 291 aa36.22■■■■□ 3.39
LIG3-208ENST00000586407 MYD88Q99836 296 aa36.22■■■■□ 3.39
LIG3-208ENST00000586407 PPEF1O14829 653 aaPredicted RBP36.21■■■■□ 3.39
LIG3-208ENST00000586407 ABCC4O15439 1325 aa36.21■■■■□ 3.39
LIG3-208ENST00000586407 RTKN2Q8IZC4 609 aa36.2■■■■□ 3.39
LIG3-208ENST00000586407 G2E3Q7L622 706 aa36.18■■■■□ 3.38
LIG3-208ENST00000586407 STK31Q9BXU1 1019 aa36.18■■■■□ 3.38
LIG3-208ENST00000586407 TOMM70O94826 608 aa36.17■■■■□ 3.38
LIG3-208ENST00000586407 EXOSC9Q06265 439 aaKnown RBP36.17■■■■□ 3.38
LIG3-208ENST00000586407 TRIM28Q13263 835 aaKnown RBP36.15■■■■□ 3.38
LIG3-208ENST00000586407 JARID2Q92833 1246 aaPredicted RBP36.15■■■■□ 3.38
LIG3-208ENST00000586407 MAP3K2Q9Y2U5 619 aa36.15■■■■□ 3.38
LIG3-208ENST00000586407 COL4A1P02462 1669 aa36.15■■■■□ 3.38
LIG3-208ENST00000586407 WDR90Q96KV7 1748 aa36.14■■■■□ 3.38
LIG3-208ENST00000586407 C16orf71Q8IYS4 520 aaPredicted RBP36.14■■■■□ 3.38
LIG3-208ENST00000586407 CHMP4AQ9BY43 222 aa36.14■■■■□ 3.38
LIG3-208ENST00000586407 COL4A5P29400 1685 aa36.13■■■■□ 3.37
LIG3-208ENST00000586407 DDX58O95786 925 aaKnown RBP36.13■■■■□ 3.37
LIG3-208ENST00000586407 IARSP41252 1262 aaKnown RBP36.13■■■■□ 3.37
LIG3-208ENST00000586407 METTL22Q9BUU2 404 aaPredicted RBP36.13■■■■□ 3.37
LIG3-208ENST00000586407 DDNO94850 711 aaPredicted RBP36.12■■■■□ 3.37
LIG3-208ENST00000586407 SLC4A2P04920 1241 aa36.12■■■■□ 3.37
LIG3-208ENST00000586407 CC2D2BQ6DHV5 1058 aa36.12■■■■□ 3.37
LIG3-208ENST00000586407 DPY19L2Q6NUT2 758 aa36.12■■■■□ 3.37
LIG3-208ENST00000586407 PI4KAP2A4QPH2 592 aa36.11■■■■□ 3.37
LIG3-208ENST00000586407 DDX46Q7L014 1031 aaKnown RBP36.11■■■■□ 3.37
LIG3-208ENST00000586407 PI4KAP1Q8N8J0 262 aa36.11■■■■□ 3.37
LIG3-208ENST00000586407 PSMD1Q99460 953 aa36.11■■■■□ 3.37
LIG3-208ENST00000586407 ZNF541Q9H0D2 1346 aa36.1■■■■□ 3.37
LIG3-208ENST00000586407 POTECB2RU33 542 aa36.1■■■■□ 3.37
LIG3-208ENST00000586407 IRS4O14654 1257 aaPredicted RBP36.1■■■■□ 3.37
LIG3-208ENST00000586407 VAMP4O75379 141 aa36.1■■■■□ 3.37
LIG3-208ENST00000586407 KSR2Q6VAB6 950 aa36.1■■■■□ 3.37
LIG3-208ENST00000586407 ATP6V0A2Q9Y487 856 aa36.1■■■■□ 3.37
LIG3-208ENST00000586407 CACNA1FO60840 1977 aa36.09■■■■□ 3.37
LIG3-208ENST00000586407 HSPA6P17066 643 aa36.08■■■■□ 3.37
LIG3-208ENST00000586407 GRAPQ13588 217 aa36.08■■■■□ 3.37
LIG3-208ENST00000586407 GRAPLQ8TC17 118 aaPredicted RBP36.08■■■■□ 3.37
LIG3-208ENST00000586407 VEGFAP15692 232 aaPredicted RBP36.07■■■■□ 3.36
LIG3-208ENST00000586407 ZBTB38Q8NAP3 1195 aaPredicted RBP36.07■■■■□ 3.36
LIG3-208ENST00000586407 RBM46Q8TBY0 533 aaKnown RBP36.07■■■■□ 3.36
LIG3-208ENST00000586407 CWC25Q9NXE8 425 aaPredicted RBP36.07■■■■□ 3.36
LIG3-208ENST00000586407 ZNF521Q96K83 1311 aa36.07■■■■□ 3.36
LIG3-208ENST00000586407 IGKV5-2P06315 115 aa36.06■■■■□ 3.36
LIG3-208ENST00000586407 CCDC191Q8NCU4 936 aa36.06■■■■□ 3.36
LIG3-208ENST00000586407 MYH16Q9H6N6 1097 aa36.06■■■■□ 3.36
LIG3-208ENST00000586407 SF3B3Q15393 1217 aaKnown RBP36.05■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms