RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	ERC2	O15083	957 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	NUCB2	P80303	420 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	CCDC173	Q0VFZ6	552 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	OTUD6B	Q8N6M0	293 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	CEP120	Q8N960	986 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	TMX3	Q96JJ7	454 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	HMMR	O75330	724 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	ADAMTS2	O95450	1211 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	PIP4K2A	P48426	406 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	AIMP1	Q12904	312 aa	Known RBP	13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	CHPF2	Q9P2E5	772 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	PPME1	Q9Y570	386 aa		13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	MYBPC2	Q14324	1141 aa		13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	ATL2	Q8NHH9	583 aa		13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	LRRCC1	Q9C099	1032 aa		13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	SPG7	Q9UQ90	795 aa		13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	TPD52L2	O43399	206 aa	Known RBP	13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	MX1	P20591	662 aa		13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	EIF4A1	P60842	406 aa	Known RBP	13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	LARP1	Q6PKG0	1096 aa	Known RBP	13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	ZSCAN30	Q86W11	494 aa		13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	SALL3	Q9BXA9	1300 aa		13.9	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	NUTM2E	B1AL46	878 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	JARID2	Q92833	1246 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	FAM13B	Q9NYF5	915 aa		13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PXDN	Q92626	1479 aa		13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	KIF1A	Q12756	1690 aa		13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	SOS2	Q07890	1332 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	KAT6B	Q8WYB5	2073 aa		13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	TESPA1	A2RU30	521 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	REC8	O95072	547 aa		13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	HSP90AB3P	Q58FF7	597 aa		13.89	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	GADD45B	O75293	160 aa	Predicted RBP	13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PEX14	O75381	377 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CYP2E1	P05181	493 aa	Predicted RBP	13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CPA1	P15085	419 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ATP8B2	P98198	1209 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	BTG4	Q9NY30	223 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CYP27B1	O15528	508 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	DHX16	O60231	1041 aa	Known RBP	13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PROSER3	Q2NL68	480 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PPP1R42	Q7Z4L9	355 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	UBTFL1	P0CB47	393 aa	Predicted RBP	13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	MYL6B	P14649	208 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	IFNL2	Q8IZJ0	200 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ESYT1	Q9BSJ8	1104 aa		13.88	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PI4KAP2	A4QPH2	592 aa		13.87	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	SURF6	O75683	361 aa	Known RBP	13.87	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PHKG2	P15735	406 aa		13.87	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PI4KAP1	Q8N8J0	262 aa		13.87	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ISY1	Q9ULR0	285 aa	Known RBP	13.87	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	SOS1	Q07889	1333 aa	Predicted RBP	13.87	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PPP1R9B	Q96SB3	815 aa		13.87	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ALS2	Q96Q42	1657 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CHML	P26374	656 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CABP4	P57796	275 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	SLIT3	O75094	1523 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	GNAI3	P08754	354 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	NBPF9	Q3BBW0	867 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	TTC5	Q8N0Z6	440 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CEMIP	Q8WUJ3	1361 aa		13.86	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	SRGAP3	O43295	1099 aa		13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PTCD1	O75127	700 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ZNF445	P59923	1031 aa		13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	OSBPL3	Q9H4L5	887 aa		13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	PA2G4	Q9UQ80	394 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.85	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	GOLIM4	O00461	696 aa		13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	FOSB	P53539	338 aa		13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	TSC1	Q92574	1164 aa		13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	FAM208A	Q9UK61	1670 aa	Known RBP	13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ZNF790	Q6PG37	636 aa		13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	GET4	Q7L5D6	327 aa	Predicted RBP	13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ZCRB1	Q8TBF4	217 aa	Known RBP	13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	SLC52A2	Q9HAB3	445 aa		13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	SUGT1	Q9Y2Z0	365 aa		13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	MEGF6	O75095	1541 aa		13.84	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	FAM177B	A6PVY3	158 aa		13.83	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	GIGYF1	O75420	1035 aa	Predicted RBP	13.83	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CWF19L2	Q2TBE0	894 aa	Known RBP	13.83	□□□□□ -0.19
CDK5RAP3-231	ENST00000584063	CLEC17A	Q6ZS10	378 aa		13.83	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	SYTL4	Q96C24	671 aa	Predicted RBP	13.83	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	ZNF496	Q96IT1	587 aa	Predicted RBP	13.83	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	SRCIN1	Q9C0H9	1055 aa		13.83	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	CHMP3	Q9Y3E7	222 aa		13.83	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	WDR17	Q8IZU2	1322 aa		13.83	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	LRRC37A3	O60309	1634 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	RNF217	Q8TC41	542 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	MTA3	Q9BTC8	594 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	GOLGA6C	A6NDK9	693 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	GOLGA6B	A6NDN3	693 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	RIOK3	O14730	519 aa	Known RBP	13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	GOLGA6D	P0CG33	693 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 138 ms